Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACN19N_RS01865 Genome accession   NZ_CP184160
Coordinates   407790..408476 (-) Length   228 a.a.
NCBI ID   WP_269229511.1    Uniprot ID   -
Organism   Acinetobacter sp. LF10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402790..413476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS01830 (ACN19N_01830) mlaE 403214..403993 (+) 780 WP_269229506.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACN19N_RS01835 (ACN19N_01835) - 403993..404670 (+) 678 WP_269229507.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACN19N_RS01840 (ACN19N_01840) - 404690..405322 (+) 633 WP_269229508.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ACN19N_RS01845 (ACN19N_01845) - 405334..405621 (+) 288 WP_004660311.1 STAS domain-containing protein -
  ACN19N_RS01850 (ACN19N_01850) - 405664..406677 (-) 1014 WP_046738987.1 CorA family divalent cation transporter -
  ACN19N_RS01855 (ACN19N_01855) - 406850..407434 (+) 585 WP_269229509.1 TIGR00730 family Rossman fold protein -
  ACN19N_RS01860 (ACN19N_01860) - 407444..407839 (+) 396 WP_269229510.1 NUDIX hydrolase -
  ACN19N_RS01865 (ACN19N_01865) comF 407790..408476 (-) 687 WP_269229511.1 ComF family protein Machinery gene
  ACN19N_RS01870 (ACN19N_01870) recG 408469..410514 (-) 2046 WP_420001860.1 ATP-dependent DNA helicase RecG -
  ACN19N_RS01875 (ACN19N_01875) - 410533..411351 (+) 819 WP_420001861.1 NAD-dependent epimerase/dehydratase family protein -
  ACN19N_RS01880 (ACN19N_01880) - 411476..412456 (+) 981 WP_420001862.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26379.57 Da        Isoelectric Point: 8.5928

>NTDB_id=1108006 ACN19N_RS01865 WP_269229511.1 407790..408476(-) (comF) [Acinetobacter sp. LF10]
MFKFISRSTRQLFDYLTPCSLCDIGIKRHFGVCQSCWEQLPWLKQSIERNQQQIFVTCHYQYPIDRIIQQFKYEQKLHHQ
RLLEGLLQQLKLPKVHAIVPMPISTDRLVERGFNQTLLLAQALSKSLNVPIWQPVQRLAQHSQKGLSRIERLENIEQQFV
AAPPNHLRYRKVLIIDDVVTTGSSITALSYVLQQLGCQQIYSICLAAAVNHQASTLDFADTMESPHVE

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1108006 ACN19N_RS01865 WP_269229511.1 407790..408476(-) (comF) [Acinetobacter sp. LF10]
ATGTTTAAATTCATTAGCAGATCAACACGACAGCTTTTTGATTATCTAACCCCATGTAGCCTGTGTGATATTGGTATAAA
AAGGCACTTTGGCGTGTGTCAAAGTTGTTGGGAACAATTACCGTGGTTAAAACAATCCATCGAGCGTAACCAACAACAGA
TTTTTGTTACCTGCCATTATCAATATCCGATTGATCGCATCATTCAGCAATTTAAATATGAACAAAAACTGCATCATCAA
CGACTATTGGAAGGACTGCTACAACAACTAAAGCTTCCTAAAGTTCATGCCATCGTTCCAATGCCGATTTCAACAGATCG
CTTGGTAGAACGAGGTTTCAATCAAACATTGCTACTCGCTCAAGCACTGAGTAAAAGCTTAAATGTACCCATCTGGCAAC
CCGTGCAACGCTTGGCGCAACATTCGCAAAAAGGTTTGTCACGCATAGAAAGACTAGAAAATATTGAACAGCAATTCGTG
GCTGCACCACCCAATCATCTTCGTTATCGAAAAGTCTTAATCATCGATGATGTTGTGACTACAGGGAGTTCGATCACTGC
TTTATCATACGTCTTACAACAACTTGGCTGCCAACAAATTTATAGTATCTGTTTAGCAGCTGCAGTAAATCATCAAGCTA
GTACACTAGATTTTGCTGACACCATGGAATCACCACATGTTGAGTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

67.308

91.228

0.614
  comF Acinetobacter baumannii D1279779

66.827

91.228

0.61

Multiple sequence alignment