Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ACN19N_RS01570 Genome accession   NZ_CP184160
Coordinates   347503..348018 (+) Length   171 a.a.
NCBI ID   WP_269229463.1    Uniprot ID   A0A9E9L3U0
Organism   Acinetobacter sp. LF10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342503..353018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS01560 (ACN19N_01560) - 342726..343475 (+) 750 WP_269229461.1 pilus assembly PilX family protein -
  ACN19N_RS01565 (ACN19N_01565) - 343489..347490 (+) 4002 WP_420001839.1 hypothetical protein -
  ACN19N_RS01570 (ACN19N_01570) comE 347503..348018 (+) 516 WP_269229463.1 type IV pilin protein Machinery gene
  ACN19N_RS01575 (ACN19N_01575) pilE 348012..348452 (+) 441 WP_269229464.1 type IV pilin protein Machinery gene
  ACN19N_RS01580 (ACN19N_01580) rpsP 348710..348967 (+) 258 WP_004660208.1 30S ribosomal protein S16 -
  ACN19N_RS01585 (ACN19N_01585) rimM 348984..349532 (+) 549 WP_005156501.1 ribosome maturation factor RimM -
  ACN19N_RS01590 (ACN19N_01590) trmD 349578..350318 (+) 741 WP_269229465.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACN19N_RS01595 (ACN19N_01595) rplS 350515..350886 (+) 372 WP_004660214.1 50S ribosomal protein L19 -
  ACN19N_RS01600 (ACN19N_01600) - 350945..351919 (-) 975 WP_269238622.1 esterase/lipase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18934.53 Da        Isoelectric Point: 8.9209

>NTDB_id=1108004 ACN19N_RS01570 WP_269229463.1 347503..348018(+) (comE) [Acinetobacter sp. LF10]
MQTSQQGFTLIELMVVLVIITIFAVIAIPSYQVYSRRAVASTAQQEIQRLADQLERHKGKNFSYLGFDASYMYKNTTGNL
VGYDPVTSQLVLPVGATGTDIRYKLSIRDGTDTTKLLTDVTALGQRWVIRAESTDPQNFSYLMTNTGTQCRNKTAANVTF
TSCGVGGENKW

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1108004 ACN19N_RS01570 WP_269229463.1 347503..348018(+) (comE) [Acinetobacter sp. LF10]
ATGCAAACATCCCAGCAAGGTTTTACATTGATTGAGTTAATGGTAGTTTTGGTAATTATTACTATTTTTGCCGTCATTGC
TATTCCAAGCTATCAAGTGTATTCACGTCGAGCTGTTGCAAGTACGGCACAACAAGAAATACAACGTTTAGCTGATCAAT
TGGAACGCCATAAAGGTAAAAACTTTAGTTACTTAGGCTTTGATGCAAGTTATATGTATAAGAACACAACTGGTAATCTG
GTGGGGTATGACCCAGTAACATCTCAACTAGTTTTGCCTGTTGGTGCCACTGGAACTGATATTCGTTATAAGTTATCTAT
TAGGGATGGTACTGATACTACAAAATTATTGACTGATGTAACGGCGTTAGGGCAACGATGGGTGATTCGGGCTGAAAGCA
CAGATCCGCAGAACTTTAGTTATTTAATGACTAATACTGGGACACAATGTAGAAATAAAACAGCTGCTAATGTCACTTTT
ACTAGCTGTGGTGTGGGTGGGGAAAATAAATGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

53.254

98.83

0.526
  pilY2 Acinetobacter baumannii D1279779

47.799

92.982

0.444

Multiple sequence alignment