Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACGJAX_RS13615 Genome accession   NZ_AP035776
Coordinates   2920953..2921588 (+) Length   211 a.a.
NCBI ID   WP_247255339.1    Uniprot ID   -
Organism   Pseudomonas moorei strain m318     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2915953..2926588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGJAX_RS13595 (PMm318_A26730) - 2916201..2917133 (+) 933 WP_247255336.1 ABC transporter ATP-binding protein -
  ACGJAX_RS13600 (PMm318_A26740) - 2917130..2917909 (+) 780 WP_390959407.1 ABC transporter permease -
  ACGJAX_RS13605 (PMm318_A26750) - 2917974..2918489 (-) 516 WP_390959409.1 DUF2062 domain-containing protein -
  ACGJAX_RS13610 (PMm318_A26760) comA 2918626..2920854 (+) 2229 WP_390959411.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACGJAX_RS13615 (PMm318_A26770) exbB 2920953..2921588 (+) 636 WP_247255339.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACGJAX_RS13620 (PMm318_A26780) - 2921585..2922010 (+) 426 WP_090317677.1 biopolymer transporter ExbD -
  ACGJAX_RS13625 (PMm318_A26790) lpxK 2922010..2923020 (+) 1011 WP_248915779.1 tetraacyldisaccharide 4'-kinase -
  ACGJAX_RS13630 (PMm318_A26800) - 2923044..2923229 (+) 186 WP_003179363.1 Trm112 family protein -
  ACGJAX_RS13635 (PMm318_A26810) kdsB 2923226..2923990 (+) 765 WP_247255341.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACGJAX_RS13640 (PMm318_A26820) - 2923990..2924454 (+) 465 WP_247255342.1 low molecular weight protein-tyrosine-phosphatase -
  ACGJAX_RS13645 (PMm318_A26830) murB 2924451..2925470 (+) 1020 WP_390959415.1 UDP-N-acetylmuramate dehydrogenase -
  ACGJAX_RS13650 (PMm318_A26840) - 2925714..2926184 (+) 471 WP_390959417.1 2Fe-2S iron-sulfur cluster-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22995.20 Da        Isoelectric Point: 6.8770

>NTDB_id=110786 ACGJAX_RS13615 WP_247255339.1 2920953..2921588(+) (exbB) [Pseudomonas moorei strain m318]
MWELVKSGGWMMLPIILSSIVAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMATNPAVLAGGISKALITTA
SGLIVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=110786 ACGJAX_RS13615 WP_247255339.1 2920953..2921588(+) (exbB) [Pseudomonas moorei strain m318]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTGGCCATGGCGATCGTTGC
CGAGCGTCTCTGGACCCTGCGGGCCAGTCGTGTGACCCCGGAGCATTTGCTCGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTCAATAAAGAAAAGCTCAAGGAACTGCGCGCCAACTCTCCGTTGGGCGAGATCCTGGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCCGCCCGGGTCATCCATGAACTGGAACGCTACAT
CAATGCCCTCGGTACCATCGCCGCCATGGCGCCATTGCTGGGCCTGCTGGGGACGGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGTACGGGCATGGCGACCAACCCGGCGGTGTTGGCCGGTGGTATTTCCAAAGCCTTGATCACCACGGCG
TCGGGTTTGATCGTGGGTATTCCGTCGGTGTTCTTCCATCGTTTCCTGCAACGGCGTATCGATGAGCTCGTCGTGGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAGGTGGTGCAAGGCGACCGCGACGTTGATCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834

Multiple sequence alignment