Detailed information NTG0110727

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: HZ99_RS05505
• Genome accession: NZ_CP008896
• Coordinates: 1321144..1323414 (-)
• Length: 756 a.a.
• NCBI ID: WP_038441739.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain UK4
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1316144..1328414

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZ99_RS05485 (HZ99_05660)	-	1316222..1318630 (-)	2409	WP_038441736.1	DNA translocase FtsK	-
HZ99_RS05490 (HZ99_05665)	aat	1319153..1319833 (+)	681	WP_038441737.1	leucyl/phenylalanyl-tRNA--protein transferase	-
HZ99_RS05495 (HZ99_05670)	-	1319889..1320596 (+)	708	WP_038441738.1	arginyltransferase	-
HZ99_RS05500 (HZ99_05675)	infA	1320697..1320915 (+)	219	WP_002553999.1	translation initiation factor IF-1	-
HZ99_RS05505 (HZ99_05680)	clpC	1321144..1323414 (-)	2271	WP_038441739.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
HZ99_RS05510 (HZ99_05685)	clpS	1323444..1323812 (-)	369	WP_029293391.1	ATP-dependent Clp protease adapter ClpS	-
HZ99_RS05515 (HZ99_05690)	cspD	1324037..1324336 (+)	300	WP_038447950.1	cold shock domain-containing protein CspD	-
HZ99_RS05520 (HZ99_05695)	icd	1324417..1325673 (-)	1257	WP_038447951.1	NADP-dependent isocitrate dehydrogenase	-
HZ99_RS05525 (HZ99_05700)	-	1326169..1328394 (+)	2226	WP_038441740.1	NADP-dependent isocitrate dehydrogenase	-

Sequence

Protein

• Length: 756 a.a.
• Molecular weight: 83355.91 Da
• Isoelectric Point: 5.9867

>NTDB_id=110727 HZ99_RS05505 WP_038441739.1 1321144..1323414(-) (clpC) [Pseudomonas fluorescens strain UK4]
MLNRELEVTLNLAFKEARSKRHEFMTVEHLLLALLDNEAAATVLRACGANLDKLKHDLQEFIDSTTPLIPVHDEDRETQP
TLGFQRVLQRAVFHVQSSGKREVTGANVLVAIFSEQESQAVFLLKQQSVARIDVVNYIAHGISKVPGHGDHSEGEQDMQD
DEGGESSSSSNPLDAYASNLNELARQGRIDPLVGREMEVERVAQILARRRKNNPLLVGEAGVGKTAIAEGLAKRIVDNQV
PDLLANSVVYSLDLGALLAGTKYRGDFEKRFKALLGELKKRPQAILFIDEIHTIIGAGAASGGVMDASNLLKPLLSSGDI
RCIGSTTFQEFRGIFEKDRALARRFQKVDVSEPSVEDTIGILRGLKGRFEAHHSIEYSDEALRAAAELASRYINDRHMPD
KAIDVIDEAGAYQRLQPVEKRVKRIEVAQVEDIVAKIARIPPKHVTSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIKL
SRAGLKSPDKPVGSFLFAGPTGVGKTEAARQLAKAMGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQ
PHCVLLLDEIEKAHPEVFNLLLQVMDHGTLTDNNGRKADFRNVIVIMTTNAGAETAARASIGFTHQDHSSDAMEVIKKSF
TPEFRNRLDTIIQFGRLSHEVIKSVVDKFLTELQAQLEDKRVQLEVTDAARSWIAEGGYDAAMGARPMARLIQDKIKRPL
AEEILFGELSDHGGVVHIDLKNGELTFEFETTAEMA

Nucleotide

• Length: 2271 bp

>NTDB_id=110727 HZ99_RS05505 WP_038441739.1 1321144..1323414(-) (clpC) [Pseudomonas fluorescens strain UK4]
ATGTTAAACCGCGAGCTCGAAGTCACCCTCAATCTTGCCTTCAAGGAGGCCCGTTCGAAGCGTCATGAATTCATGACCGT
CGAACACCTGCTGCTGGCACTTTTGGATAACGAAGCTGCCGCCACCGTTCTGCGTGCGTGCGGCGCCAACCTCGACAAGC
TCAAGCATGACCTGCAAGAGTTTATTGACTCCACCACGCCACTGATCCCCGTGCATGACGAGGACCGTGAAACCCAGCCA
ACCCTGGGCTTCCAACGGGTGTTGCAGCGTGCTGTCTTCCACGTGCAGAGCTCCGGCAAGCGTGAAGTGACGGGCGCCAA
TGTACTGGTTGCCATCTTCAGTGAGCAGGAAAGCCAGGCAGTGTTCCTGCTCAAGCAGCAGAGCGTGGCGCGTATCGATG
TCGTCAACTACATTGCCCATGGCATCTCGAAAGTGCCAGGGCATGGCGATCACTCCGAAGGTGAGCAGGATATGCAGGAC
GACGAGGGCGGTGAGTCTTCTTCTTCAAGCAACCCGCTGGATGCCTATGCCAGCAACCTCAACGAGCTTGCGCGCCAGGG
GCGGATCGATCCGCTGGTTGGGCGCGAAATGGAAGTTGAACGTGTTGCGCAGATCCTGGCTCGTCGTCGTAAGAACAACC
CGCTGTTGGTGGGCGAGGCGGGCGTGGGCAAGACTGCAATTGCCGAAGGCTTGGCCAAGCGCATTGTAGATAACCAGGTG
CCTGATCTGCTGGCCAACAGCGTCGTCTACTCCCTTGACCTGGGGGCGCTGCTCGCCGGGACCAAGTACCGTGGCGACTT
TGAAAAACGGTTCAAGGCGTTGCTTGGCGAGCTGAAAAAGCGTCCGCAGGCGATCCTGTTCATCGATGAGATCCACACCA
TCATTGGTGCCGGCGCGGCTTCTGGTGGGGTGATGGATGCATCCAATCTGCTCAAGCCGCTGTTGTCCTCGGGCGATATC
CGTTGCATCGGCTCGACCACCTTCCAGGAGTTTCGTGGGATCTTCGAAAAAGACCGTGCCCTGGCGCGTCGCTTCCAGAA
AGTCGACGTGTCCGAGCCTTCGGTCGAAGACACCATTGGCATCCTGCGTGGGCTGAAAGGTCGTTTCGAGGCGCATCACA
GCATCGAATACAGTGATGAGGCGCTGCGTGCGGCCGCTGAACTGGCTTCGCGCTACATCAATGACCGGCATATGCCGGAC
AAAGCCATCGATGTGATCGACGAAGCGGGGGCCTACCAGCGCCTGCAGCCGGTAGAGAAGCGTGTGAAGCGTATCGAAGT
GGCTCAGGTCGAGGATATCGTGGCGAAAATCGCGCGTATTCCGCCAAAACACGTTACCAGTTCCGACAAGGAGCTACTGC
GTAACCTGGAGCGCGATCTCAAGCTGACGGTGTTTGGCCAGGATGCGGCGATTGATTCGCTGTCGACGGCGATCAAGCTG
TCCCGGGCCGGGCTCAAGTCGCCGGACAAGCCGGTAGGTTCGTTCCTGTTCGCCGGCCCTACCGGCGTTGGTAAGACCGA
GGCGGCGCGGCAGTTGGCCAAGGCCATGGGCATTGAGCTGGTGCGGTTCGACATGTCCGAATACATGGAGCGGCACACTG
TGTCGCGCCTGATCGGTGCGCCTCCGGGCTATGTTGGCTTTGATCAGGGTGGCCTGTTGACCGAGGCGATCACCAAGCAG
CCGCATTGCGTGCTGCTGCTCGATGAAATTGAAAAGGCCCACCCGGAAGTCTTCAACCTGCTGTTGCAGGTCATGGATCA
CGGGACCCTGACCGATAACAACGGGCGCAAGGCGGACTTTCGCAACGTGATCGTGATCATGACCACCAACGCCGGCGCCG
AGACGGCCGCGCGGGCTTCCATTGGCTTCACTCATCAAGATCACTCTTCCGACGCCATGGAAGTGATCAAGAAGAGCTTC
ACGCCGGAATTCCGTAACCGCCTGGACACCATTATCCAGTTTGGTCGTCTCAGTCATGAGGTGATCAAAAGCGTGGTGGA
CAAGTTCCTTACCGAGCTTCAGGCGCAATTGGAAGACAAGCGTGTGCAGTTGGAAGTGACGGACGCGGCGCGCAGTTGGA
TTGCCGAAGGTGGCTATGATGCGGCAATGGGCGCCCGCCCAATGGCGCGCCTGATCCAGGACAAGATCAAGCGGCCGCTG
GCCGAAGAGATTCTGTTCGGCGAGCTTTCCGATCATGGTGGCGTGGTGCATATCGACTTGAAGAATGGTGAGCTGACCTT
CGAATTCGAAACCACGGCCGAAATGGCCTGA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (354-457)

• ATPase family associated with various cellular activities (AAA) (AAA) (215-326)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (13-62)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (657-737)

• AAA domain (Cdc48 subfamily) (AAA_2) (490-651)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	39.583	100	0.427
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	41.45	96.693	0.401
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	37.39	100	0.394
clpC	Streptococcus mutans UA159	41.054	95.37	0.392
clpC	Streptococcus pneumoniae D39	43.513	83.598	0.364
clpC	Streptococcus pneumoniae Rx1	43.513	83.598	0.364
clpC	Streptococcus pneumoniae TIGR4	43.513	83.598	0.364