Detailed information NTG0110722

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: HZ99_RS04640
• Genome accession: NZ_CP008896
• Coordinates: 1123929..1125131 (-)
• Length: 400 a.a.
• NCBI ID: WP_038441609.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain UK4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1118929..1130131

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZ99_RS04605 (HZ99_04750)	gspN	1119832..1120491 (-)	660	WP_038441605.1	type II secretion system protein N	-
HZ99_RS04610	gspM	1120488..1120919 (-)	432	WP_080727661.1	type II secretion system protein GspM	-
HZ99_RS04615	-	1120916..1122025 (-)	1110	WP_051903045.1	GspL/Epsl periplasmic domain-containing protein	-
HZ99_RS04620 (HZ99_04765)	-	1122040..1122630 (-)	591	WP_038441606.1	PulJ/GspJ family protein	-
HZ99_RS04625 (HZ99_04770)	-	1122627..1122992 (-)	366	WP_038441607.1	type II secretion system protein	-
HZ99_RS04630 (HZ99_04775)	gspH	1122989..1123438 (-)	450	WP_038441608.1	type II secretion system minor pseudopilin GspH	-
HZ99_RS04635 (HZ99_04780)	gspG	1123441..1123899 (-)	459	WP_404942426.1	type II secretion system major pseudopilin GspG	-
HZ99_RS04640 (HZ99_04785)	pilC	1123929..1125131 (-)	1203	WP_038441609.1	type II secretion system inner membrane protein GspF	Machinery gene
HZ99_RS04645 (HZ99_04790)	pilB	1125131..1126579 (-)	1449	WP_080727769.1	GspE/PulE family protein	Machinery gene
HZ99_RS04650 (HZ99_04795)	gspD	1126585..1128534 (-)	1950	WP_115284177.1	type II secretion system secretin GspD	-
HZ99_RS04655 (HZ99_04800)	-	1128542..1128970 (-)	429	WP_038441610.1	pilus assembly protein PilZ	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 43491.22 Da
• Isoelectric Point: 10.9038

>NTDB_id=110722 HZ99_RS04640 WP_038441609.1 1123929..1125131(-) (pilC) [Pseudomonas fluorescens strain UK4]
MPTYRYQALDLRGNRRKASIQAESERHARQLLREQGLFARELQVQGASLSSPRGQRLNHGQLCELTRQLATLLSAGIPLV
DALGTLERQLAEPAIRNLLVAVRGALGEGLSLAQSLRRQGGQFNTLYCALVEAGERSGKLAPVLERLAEHLEQVQKQRHK
ARTALIYPAVLILVSLAVVIGLMTFVVPKLTEQFSHTGQSLPLITRILIGASEGLVMLGPWLLGLGLLSAVGARLLLRQA
VWRLRRDNLALRLPRIGVLLSVLESARVSRSLAILLGSGVPLLESLEVATATVGNRQIHQSLEAVREQVEGGVTLYRALS
ASGHFPPMLLNMVASGEASGTLPDMLLRVADNQERGFARQVDLLLALFEPLMILLMGAVVLFIVLAVLLPIMQLNQGLSL

Nucleotide

• Length: 1203 bp

>NTDB_id=110722 HZ99_RS04640 WP_038441609.1 1123929..1125131(-) (pilC) [Pseudomonas fluorescens strain UK4]
ATGCCGACCTATCGTTACCAGGCGCTGGACCTGCGCGGCAATCGTCGCAAAGCCAGCATCCAGGCGGAAAGCGAGCGCCA
TGCCCGCCAACTGCTGCGCGAGCAGGGCCTGTTTGCCCGTGAGTTGCAGGTGCAGGGCGCGAGCCTGTCGAGCCCGCGCG
GGCAACGTTTGAACCATGGGCAACTGTGCGAATTGACCCGCCAGTTGGCCACGCTGTTGAGCGCCGGCATCCCCTTGGTG
GATGCCCTGGGCACCCTGGAGCGCCAACTGGCAGAGCCGGCGATCCGCAATCTGCTGGTGGCGGTGCGCGGTGCCCTGGG
TGAAGGCTTGAGCCTGGCCCAGAGCCTGCGGCGCCAGGGCGGGCAGTTCAACACCCTGTATTGCGCGCTGGTGGAGGCGG
GCGAACGCTCGGGCAAATTGGCGCCGGTACTGGAGCGCCTGGCCGAACACCTGGAGCAGGTACAGAAACAACGGCACAAG
GCGCGCACCGCGTTGATCTACCCGGCGGTGCTGATTCTGGTGTCGCTGGCGGTGGTGATCGGCCTGATGACGTTTGTGGT
GCCCAAGCTCACTGAACAGTTCAGCCATACCGGGCAAAGCCTGCCGCTGATTACCCGAATATTAATCGGCGCCAGCGAGG
GCCTGGTCATGCTCGGCCCGTGGTTGCTGGGGCTGGGCTTGCTGTCGGCAGTGGGCGCGCGGCTGTTATTGCGCCAGGCG
GTATGGCGCTTGCGCCGCGACAACCTGGCCTTGCGCCTGCCACGCATCGGCGTGTTGCTGTCGGTATTGGAAAGCGCACG
GGTCTCGCGCAGCCTGGCGATTTTGCTCGGCAGTGGTGTGCCATTGCTCGAATCCCTGGAGGTTGCCACCGCGACAGTCG
GCAACCGGCAGATCCACCAGTCCCTGGAGGCGGTGCGTGAACAGGTCGAAGGCGGCGTGACCCTGTACCGCGCCCTCAGT
GCCAGCGGGCACTTCCCGCCGATGCTGTTGAACATGGTCGCCAGCGGCGAGGCCAGCGGCACCTTGCCCGACATGCTCTT
GCGCGTCGCCGACAACCAGGAGCGTGGGTTTGCGCGCCAGGTCGACCTGCTGCTGGCGTTATTCGAACCCCTGATGATTC
TGCTGATGGGCGCGGTGGTGCTGTTCATCGTGCTGGCGGTGTTGCTGCCGATCATGCAGCTCAACCAGGGCCTTAGCCTT
TGA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (66-188)

• Type II secretion system (T2SS), protein F (T2SSF) (269-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	37.685	100	0.383