Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACLKMZ_RS09475 | Genome accession | NZ_CP183909 |
| Coordinates | 1967191..1967571 (-) | Length | 126 a.a. |
| NCBI ID | WP_411691521.1 | Uniprot ID | - |
| Organism | Acinetobacter gandensis strain M1_NDM_tet(X3) | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1962191..1972571
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLKMZ_RS09445 | tadA | 1962383..1962934 (-) | 552 | WP_067767476.1 | tRNA adenosine(34) deaminase TadA | - |
| ACLKMZ_RS09450 | - | 1962938..1964062 (-) | 1125 | WP_067767479.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACLKMZ_RS09455 | ung | 1964059..1964772 (-) | 714 | WP_067767482.1 | uracil-DNA glycosylase | - |
| ACLKMZ_RS09460 | - | 1964811..1965407 (-) | 597 | WP_180057037.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| ACLKMZ_RS09465 | gspK | 1965581..1966528 (-) | 948 | WP_180057039.1 | type II secretion system minor pseudopilin GspK | - |
| ACLKMZ_RS09470 | xcpW | 1966565..1967194 (-) | 630 | WP_411691522.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACLKMZ_RS09475 | xcpV | 1967191..1967571 (-) | 381 | WP_411691521.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ACLKMZ_RS09480 | - | 1967561..1968118 (-) | 558 | WP_067767496.1 | type II secretion system protein | - |
| ACLKMZ_RS09485 | - | 1968128..1968742 (-) | 615 | WP_067767499.1 | TetR/AcrR family transcriptional regulator | - |
| ACLKMZ_RS09490 | - | 1968787..1969560 (-) | 774 | WP_067767502.1 | TatD family hydrolase | - |
| ACLKMZ_RS09495 | - | 1969592..1969933 (-) | 342 | WP_067767505.1 | PilZ domain-containing protein | - |
| ACLKMZ_RS09500 | - | 1969949..1970932 (-) | 984 | WP_411691519.1 | DNA polymerase III subunit delta' | - |
| ACLKMZ_RS09505 | kdsB | 1970945..1971706 (-) | 762 | WP_067767511.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13851.93 Da Isoelectric Point: 6.2979
>NTDB_id=1107171 ACLKMZ_RS09475 WP_411691521.1 1967191..1967571(-) (xcpV) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MRAKGFTLLEVMVALAIFATAAMALSNVAMQYTQATANAVLRSKAQFVALNEIAYMEINREWMSGTASKQVMQQDERWQI
DKKAQATISPNVQRVDVQVSLLNADTGDVAAGITSLVFFNYRVAES
MRAKGFTLLEVMVALAIFATAAMALSNVAMQYTQATANAVLRSKAQFVALNEIAYMEINREWMSGTASKQVMQQDERWQI
DKKAQATISPNVQRVDVQVSLLNADTGDVAAGITSLVFFNYRVAES
Nucleotide
Download Length: 381 bp
>NTDB_id=1107171 ACLKMZ_RS09475 WP_411691521.1 1967191..1967571(-) (xcpV) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
ATGCGGGCTAAAGGATTTACCTTGCTAGAAGTGATGGTTGCGCTTGCAATATTTGCAACCGCAGCCATGGCGTTGTCCAA
TGTTGCAATGCAGTATACTCAAGCTACTGCAAATGCAGTTTTACGTTCTAAAGCACAATTTGTTGCTTTAAATGAAATTG
CCTACATGGAAATAAATCGTGAATGGATGAGTGGGACAGCATCCAAGCAAGTTATGCAGCAAGACGAACGCTGGCAGATT
GATAAAAAAGCTCAAGCGACGATTAGTCCAAATGTTCAACGCGTTGATGTGCAAGTCAGTTTATTGAATGCTGACACTGG
CGATGTGGCGGCTGGAATTACCAGTTTGGTTTTCTTTAATTATCGTGTGGCTGAATCATGA
ATGCGGGCTAAAGGATTTACCTTGCTAGAAGTGATGGTTGCGCTTGCAATATTTGCAACCGCAGCCATGGCGTTGTCCAA
TGTTGCAATGCAGTATACTCAAGCTACTGCAAATGCAGTTTTACGTTCTAAAGCACAATTTGTTGCTTTAAATGAAATTG
CCTACATGGAAATAAATCGTGAATGGATGAGTGGGACAGCATCCAAGCAAGTTATGCAGCAAGACGAACGCTGGCAGATT
GATAAAAAAGCTCAAGCGACGATTAGTCCAAATGTTCAACGCGTTGATGTGCAAGTCAGTTTATTGAATGCTGACACTGG
CGATGTGGCGGCTGGAATTACCAGTTTGGTTTTCTTTAATTATCGTGTGGCTGAATCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
70.732 |
97.619 |
0.69 |