Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ACLKMZ_RS09470 Genome accession   NZ_CP183909
Coordinates   1966565..1967194 (-) Length   209 a.a.
NCBI ID   WP_411691522.1    Uniprot ID   -
Organism   Acinetobacter gandensis strain M1_NDM_tet(X3)     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1961565..1972194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKMZ_RS09440 - 1961924..1962355 (-) 432 WP_288687840.1 SRPBCC family protein -
  ACLKMZ_RS09445 tadA 1962383..1962934 (-) 552 WP_067767476.1 tRNA adenosine(34) deaminase TadA -
  ACLKMZ_RS09450 - 1962938..1964062 (-) 1125 WP_067767479.1 enoyl-CoA hydratase/isomerase family protein -
  ACLKMZ_RS09455 ung 1964059..1964772 (-) 714 WP_067767482.1 uracil-DNA glycosylase -
  ACLKMZ_RS09460 - 1964811..1965407 (-) 597 WP_180057037.1 6-pyruvoyl trahydropterin synthase family protein -
  ACLKMZ_RS09465 gspK 1965581..1966528 (-) 948 WP_180057039.1 type II secretion system minor pseudopilin GspK -
  ACLKMZ_RS09470 xcpW 1966565..1967194 (-) 630 WP_411691522.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ACLKMZ_RS09475 xcpV 1967191..1967571 (-) 381 WP_411691521.1 type II secretion system minor pseudopilin GspI Machinery gene
  ACLKMZ_RS09480 - 1967561..1968118 (-) 558 WP_067767496.1 type II secretion system protein -
  ACLKMZ_RS09485 - 1968128..1968742 (-) 615 WP_067767499.1 TetR/AcrR family transcriptional regulator -
  ACLKMZ_RS09490 - 1968787..1969560 (-) 774 WP_067767502.1 TatD family hydrolase -
  ACLKMZ_RS09495 - 1969592..1969933 (-) 342 WP_067767505.1 PilZ domain-containing protein -
  ACLKMZ_RS09500 - 1969949..1970932 (-) 984 WP_411691519.1 DNA polymerase III subunit delta' -
  ACLKMZ_RS09505 kdsB 1970945..1971706 (-) 762 WP_067767511.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23715.76 Da        Isoelectric Point: 4.8054

>NTDB_id=1107170 ACLKMZ_RS09470 WP_411691522.1 1966565..1967194(-) (xcpW) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MKRSYGFTLVELLVAIAIFAVLSALGWKVFDYVVKVKERNAEHEAKLSQLQEAYQQILRDTVQAVPLTANINGEIQPALV
LQNGRFNFSKTGVTDPLNQGLAPDERIEYQYRADEKKLYRLKFRNLNQTGNDQPDSSVLLDNVEQFKIVILNPSESDSWP
DRAADSTNEDSFAVLPRGVKINLAVSGTEYEWLFSLLNTDYLQDKKDGR

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1107170 ACLKMZ_RS09470 WP_411691522.1 1966565..1967194(-) (xcpW) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
ATGAAAAGGTCATATGGATTCACATTAGTTGAATTGTTAGTTGCGATCGCTATTTTCGCAGTACTATCTGCCTTGGGATG
GAAAGTATTTGATTATGTAGTGAAAGTGAAAGAGCGAAATGCTGAGCACGAGGCCAAATTGAGTCAGTTGCAAGAGGCGT
ATCAGCAGATATTAAGAGATACCGTGCAAGCGGTTCCCTTGACAGCCAATATTAATGGTGAAATACAGCCAGCGCTAGTA
TTACAAAATGGTCGATTTAATTTTAGTAAAACCGGTGTAACTGATCCACTTAATCAGGGACTTGCACCAGACGAACGAAT
AGAATATCAGTATCGTGCAGATGAAAAAAAACTCTATCGACTAAAATTTAGAAATTTAAATCAAACAGGGAATGATCAAC
CTGATTCTAGTGTGCTACTAGATAATGTTGAGCAGTTTAAAATTGTCATATTAAATCCAAGTGAATCTGACAGTTGGCCT
GATCGTGCTGCGGATTCAACCAATGAAGATTCTTTTGCGGTATTGCCGCGTGGGGTAAAAATAAATTTGGCTGTTAGTGG
TACTGAGTATGAATGGCTATTTAGTTTGTTAAATACAGATTATTTACAGGACAAAAAAGATGGTCGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-193)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

59.184

93.78

0.555

Multiple sequence alignment