Detailed information NTG1107152

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACLKMZ_RS01380
• Genome accession: NZ_CP183909
• Coordinates: 298527..299957 (-)
• Length: 476 a.a.
• NCBI ID: WP_067763143.1
• Uniprot ID: -
• Organism: Acinetobacter gandensis strain M1_NDM_tet(X3)
• Function: regulation of type IV pilus assembly (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	300815..301516	298527..299957	flank	858

Gene organization within MGE regions

Location: 298527..301516

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLKMZ_RS01380	pilR	298527..299957 (-)	1431	WP_067763143.1	sigma-54-dependent transcriptional regulator	Regulator
ACLKMZ_RS01385	-	299975..300787 (-)	813	Protein_263	sensor histidine kinase	-
ACLKMZ_RS01390	-	300815..301516 (-)	702	WP_004282344.1	IS1 family transposase	-

Sequence

Protein

• Length: 476 a.a.
• Molecular weight: 53192.90 Da
• Isoelectric Point: 6.1199

>NTDB_id=1107152 ACLKMZ_RS01380 WP_067763143.1 298527..299957(-) (pilR) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MDSQPLVLLVDDEEDLCTLMQMSLSRMGVNTHIAHRIEDAKKALSNHVYDACLTDLNLPDGNGLQLLDWINEHCPNLPVA
VLTAYGNMEIAIAALKAGAFDFVSKPVNTKHLEQLLQKALNKPVNSNQPQQDSLEHKMLIGQSLPIQQLRTTLKKLARSQ
APVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPSELMESELFGHKKGSFSGAIQDKQGLIQSAHGGSLFLDEI
AELPLSMQVKLLRAVQEKRIRPVGSDCEIDVDFRVISASHQDLDALVQQGRFRQDLYFRIHVMDLALPALRERGDDILLL
AKYFIQKISNEWEIAAKALTPRAQHFLLSQYYPGNVRELRNIIERAMTLCDDEQIDLQHLQSAPLRHPNSALNTSALNNP
ESNVSSQGSADITALPKKLPEEGLELYLENIEKDILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEDEE

Nucleotide

• Length: 1431 bp

>NTDB_id=1107152 ACLKMZ_RS01380 WP_067763143.1 298527..299957(-) (pilR) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
GTGGATTCTCAACCACTGGTATTATTAGTCGATGATGAGGAAGATTTATGTACCCTCATGCAAATGTCATTGTCACGGAT
GGGAGTCAATACACATATTGCTCATCGCATTGAAGATGCAAAAAAAGCACTATCTAACCATGTGTATGATGCCTGTTTAA
CTGACCTTAACCTTCCCGATGGCAATGGGCTGCAGCTTTTGGATTGGATCAATGAACACTGTCCAAACCTGCCCGTTGCA
GTACTGACTGCCTATGGCAACATGGAAATTGCCATTGCAGCGTTAAAGGCAGGCGCATTTGACTTTGTCAGTAAACCAGT
CAATACCAAACATTTAGAACAATTGTTGCAAAAAGCACTCAATAAACCGGTTAATTCTAATCAACCGCAACAAGACAGTC
TTGAACATAAAATGTTGATTGGGCAGTCTTTACCCATTCAACAACTACGTACCACGCTTAAAAAATTAGCTCGTTCACAA
GCACCAGTATTTATTACCGGTGAATCAGGTACAGGCAAAGAAGTGGTAGCGAATCTAGTACATCGTCTCAGTAATCGTAA
TGAAGGACCATTTATTGCCATTAACTGTGGTGCAATTCCATCTGAATTAATGGAAAGTGAACTTTTTGGACATAAAAAAG
GCAGCTTTAGTGGTGCGATCCAAGACAAACAAGGTCTGATCCAATCTGCTCATGGCGGTAGCTTATTTTTAGATGAAATT
GCCGAATTGCCTTTGTCCATGCAGGTCAAATTATTGCGTGCTGTACAAGAAAAGCGGATTCGCCCTGTAGGTTCAGACTG
TGAAATCGATGTGGATTTCCGTGTGATCAGTGCCAGTCATCAAGACCTAGATGCTTTAGTGCAACAAGGCCGCTTCCGTC
AGGATCTATATTTCCGCATTCATGTCATGGATTTAGCCCTACCCGCACTTAGAGAACGTGGTGATGACATTTTATTATTG
GCAAAATATTTTATTCAAAAAATTAGCAATGAATGGGAAATTGCAGCAAAAGCCTTAACCCCTCGCGCTCAGCATTTTTT
ATTGAGTCAATATTATCCAGGTAATGTTCGTGAACTGCGCAATATTATTGAACGCGCCATGACTTTATGTGATGACGAGC
AGATTGATTTACAACATTTGCAGAGTGCACCATTACGCCATCCTAACAGTGCCTTAAATACCTCGGCCCTAAATAACCCT
GAGTCCAATGTATCATCACAAGGTTCAGCGGATATCACAGCCTTGCCTAAAAAATTACCAGAAGAAGGCTTAGAGCTTTA
TTTGGAAAATATTGAGAAAGACATATTACTCAATGCGCTGAATTTAACCCATTGGAATCGTACTTTGGCAGCAAAAAAAC
TGGGAATGTCATTTCGCTCTTTACGTTACCGCTTGAAAAAATTTGGTTTGGATACCGAAGATGAAGAATAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (139-305)

• Bacterial regulatory protein, Fis family (HTH_8) (428-468)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Acinetobacter baumannii strain A118	73.263	99.79	0.731
pilR	Pseudomonas aeruginosa PAK	48.827	98.529	0.481