Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACLKMZ_RS01115 Genome accession   NZ_CP183909
Coordinates   239030..240184 (-) Length   384 a.a.
NCBI ID   WP_180081265.1    Uniprot ID   -
Organism   Acinetobacter gandensis strain M1_NDM_tet(X3)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 234030..245184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKMZ_RS01090 - 234087..234952 (+) 866 Protein_209 DMT family transporter -
  ACLKMZ_RS01095 - 234975..235721 (-) 747 WP_411691618.1 helix-turn-helix transcriptional regulator -
  ACLKMZ_RS01100 - 235846..236736 (+) 891 WP_180058308.1 DMT family transporter -
  ACLKMZ_RS01105 - 237166..237735 (-) 570 WP_411691619.1 L-threonylcarbamoyladenylate synthase -
  ACLKMZ_RS01110 dprA 237766..238935 (-) 1170 WP_411691620.1 DNA-processing protein DprA Machinery gene
  ACLKMZ_RS01115 tsaP 239030..240184 (-) 1155 WP_180081265.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACLKMZ_RS01120 def 240304..240834 (+) 531 WP_067762718.1 peptide deformylase -
  ACLKMZ_RS01125 - 240921..241337 (+) 417 WP_067762717.1 DUF2946 family protein -
  ACLKMZ_RS01130 - 241409..243448 (+) 2040 WP_411691621.1 TonB-dependent copper receptor -
  ACLKMZ_RS01135 - 243510..244715 (-) 1206 WP_180081271.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42096.51 Da        Isoelectric Point: 9.3947

>NTDB_id=1107150 ACLKMZ_RS01115 WP_180081265.1 239030..240184(-) (tsaP) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MKKVLKGMPTFSALGFKKQLLALTVCVSVGMGMISVAEAAPARNVNPPSLKAGAPQVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCTYNGRPIIGKDEGDGCEGIIRRYTGGTKLQPQVRVESLNSAIPVIPLEYIKQWLE
RSMIVAPESIEGTPYILGTADQRVLAAKGQTVYARGQGMQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGVAVR
GENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNADNVTAGGSIVRVMGSIGTAAIHSVVTIDRGSLQGVQSGH
VFSVNQKGEIVTDPKTKERVQLPGQRIGNIMVFKTFDNLSYAYVLESELPIKVGASIQPPLMDD

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1107150 ACLKMZ_RS01115 WP_180081265.1 239030..240184(-) (tsaP) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
ATGAAAAAGGTTTTGAAGGGCATGCCAACTTTTAGTGCCTTGGGGTTTAAAAAGCAATTATTGGCGCTTACCGTGTGTGT
AAGTGTGGGGATGGGTATGATCAGTGTTGCCGAAGCTGCCCCTGCCCGCAACGTCAATCCACCTTCTTTAAAAGCCGGCG
CACCACAGGTCTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATATCAAAACGCTTTTTAAAAAATCCAGTTCGCTGG
CCTGAAATCTGGGCAAGTAATAAACACGTTAAAAATCCTCATTGGATTTTCCCAGGCGACCGCCTATTAATGTGTACTTA
CAATGGTCGACCGATCATTGGTAAAGATGAAGGTGATGGCTGTGAAGGAATCATTCGTCGCTATACAGGCGGCACCAAAC
TTCAGCCTCAAGTTCGTGTTGAATCATTAAACAGTGCCATTCCTGTTATCCCATTAGAATATATCAAGCAATGGCTTGAG
CGCAGCATGATCGTTGCTCCTGAGTCTATTGAAGGTACACCATATATTCTGGGTACTGCCGATCAACGTGTATTGGCTGC
CAAAGGTCAAACTGTATATGCACGCGGTCAAGGCATGCAAGTTGGTCAACGCTACGCCGTTTATCGCGAAGGCGAACCGT
ACATTTTCACTGATGCTAATGGTAAAAAATACAATGCTGGTTTAGAGCTCACTCAAGTGGCTTCTGGTGTTGCTGTTCGC
GGTGAGAATGACATTACCACATTAGAATTGACTGACACTTACAATGCTGAGGTTCGTCGTGGTGACCGTGTCCTTCCTGA
ATACGACCCAATGCTGCCAACATTGTTCTACCCAACCAATGCAGATAATGTGACTGCTGGTGGTAGCATTGTTCGCGTTA
TGGGCTCTATTGGAACTGCTGCAATTCACAGTGTAGTAACCATTGACCGTGGTAGTTTACAAGGCGTTCAATCTGGTCAT
GTATTTAGCGTGAATCAAAAAGGCGAAATCGTCACAGATCCGAAGACCAAAGAACGTGTTCAACTTCCGGGGCAACGTAT
CGGCAACATTATGGTCTTCAAAACATTTGATAACCTCAGTTACGCATACGTGCTAGAAAGTGAATTACCAATTAAAGTTG
GTGCGAGCATTCAGCCACCACTGATGGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

69.87

100

0.701

Multiple sequence alignment