Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACLKM0_RS01520 Genome accession   NZ_CP183907
Coordinates   321269..321904 (-) Length   211 a.a.
NCBI ID   WP_160232300.1    Uniprot ID   -
Organism   Acinetobacter indicus strain M3_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316269..326904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS01485 mlaE 316542..317321 (+) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACLKM0_RS01490 - 317321..317992 (+) 672 WP_411688891.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACLKM0_RS01495 - 318011..318643 (+) 633 WP_005180322.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ACLKM0_RS01500 - 318655..318942 (+) 288 WP_005180321.1 STAS domain-containing protein -
  ACLKM0_RS01505 - 319083..320096 (-) 1014 WP_005180320.1 CorA family divalent cation transporter -
  ACLKM0_RS01510 - 320249..320842 (+) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  ACLKM0_RS01515 - 320845..321246 (+) 402 WP_168399737.1 NUDIX hydrolase -
  ACLKM0_RS01520 comF 321269..321904 (-) 636 WP_160232300.1 ComF family protein Machinery gene
  ACLKM0_RS01525 recG 321891..323936 (-) 2046 WP_005180314.1 ATP-dependent DNA helicase RecG -
  ACLKM0_RS01530 - 323970..324785 (+) 816 WP_411688892.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24394.40 Da        Isoelectric Point: 9.2130

>NTDB_id=1107114 ACLKM0_RS01520 WP_160232300.1 321269..321904(-) (comF) [Acinetobacter indicus strain M3_NDM]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QSLLAGSLCELTYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1107114 ACLKM0_RS01520 WP_160232300.1 321269..321904(-) (comF) [Acinetobacter indicus strain M3_NDM]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55

Multiple sequence alignment