Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACLKM1_RS12540 Genome accession   NZ_CP183903
Coordinates   2618805..2619959 (+) Length   384 a.a.
NCBI ID   WP_005094531.1    Uniprot ID   A0A2H9YPN1
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2620800..2622019 2618805..2619959 flank 841


Gene organization within MGE regions


Location: 2618805..2622019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS12540 tsaP 2618805..2619959 (+) 1155 WP_005094531.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACLKM1_RS12545 - 2620052..2620750 (+) 699 Protein_2404 DNA-processing protein DprA -
  ACLKM1_RS12550 - 2620800..2622019 (+) 1220 WP_419867785.1 IS3 family transposase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42112.43 Da        Isoelectric Point: 9.0682

>NTDB_id=1107106 ACLKM1_RS12540 WP_005094531.1 2618805..2619959(+) (tsaP) [Acinetobacter pseudolwoffii strain M5_NDM]
MKKVLKGMPFFSALGFKNQMLALAVCVGVGMGTIHSAEAAPARNVNPPALKASAPNIYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCDGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLMAPDSVQGTPYILGTADQRVLAGKGQKVYVRGNGLVVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
SEGEVTTLELTDSYNAEVRRGDRVLAEYDPMLPTLFYPTNAESIVPGGQIVRVLGSIGTAARHSVVTLDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQVMVFKAFDQLSYAYVLDSELPIKVGAGIQPPLLED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1107106 ACLKM1_RS12540 WP_005094531.1 2618805..2619959(+) (tsaP) [Acinetobacter pseudolwoffii strain M5_NDM]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTCGCCGTTTGTGT
CGGTGTCGGTATGGGGACTATTCATTCTGCCGAGGCCGCACCTGCACGTAATGTCAATCCGCCGGCATTAAAAGCCAGTG
CACCCAATATTTATGTGGTCAAAAAAGGCGATACCCTCTGGGACATCTCAAAACGCTTTTTGAAAAACCCGGTGCGTTGG
CCTGAAATCTGGGCCAGCAACAAGCATGTGAAAAATCCACATTGGATTTTCCCGGGCGATCGCCTGTTGATGTGTGATTA
CCAGGGCCGTCCGATTATTGGCAAAGATGAAGGTGATGGTTGTGACGGTATTATCAGCCGCTATCTGGGCAGCACCTCTC
TGCAACCTCAGATTCGGGTTGAATCTTTAAACAATACCATTCCAGTGATTCCACTAGAACATATCAAACAGTGGCTAGAG
CGCTATACCCTGATGGCGCCTGATTCAGTTCAAGGCACCCCATACATTCTTGGAACTGCAGATCAGCGCGTACTGGCGGG
CAAAGGCCAGAAAGTCTATGTACGTGGTAACGGTCTGGTCGTTGGTCAACGCTATGCCGTTTATCGTGAAGCTGAGCCTT
ATGTATTTACCGATGCCAATGGCAAGAAATATACTGCTGCACTCGAGCTGCAACAGGTGGCATCTGGTATTGCGGTACGT
AGTGAAGGTGAGGTAACCACACTGGAGCTGACTGACAGTTATAACGCGGAGGTGCGTCGCGGTGACCGCGTACTCGCTGA
ATACGACCCGATGTTACCGACGCTGTTCTACCCAACCAATGCAGAAAGTATTGTGCCTGGTGGTCAGATTGTGCGTGTAT
TGGGGTCGATTGGTACTGCAGCACGTCATAGTGTCGTCACCCTTGACCGTGGTACGGCACATGGCGTTCAGACAGGTCAT
GTCTTTAGCGTAAACCAGAAAGGTGAAGTGGTGACTGATCCGAAGACTAAAGAACGGGTGCAATTGCCAGGTGAGCGTAT
TGGTCAGGTCATGGTCTTTAAAGCCTTCGATCAATTGAGTTATGCCTATGTGCTGGATAGCGAGCTTCCAATTAAAGTGG
GTGCCGGCATTCAGCCTCCTTTGTTAGAAGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H9YPN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.753

100

0.669

Multiple sequence alignment