Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACLKM2_RS12250 Genome accession   NZ_CP183899
Coordinates   2574469..2576034 (+) Length   521 a.a.
NCBI ID   WP_411686344.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2569469..2581034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM2_RS12230 - 2569968..2571272 (+) 1305 WP_411686343.1 homoserine dehydrogenase -
  ACLKM2_RS12235 thrC 2571330..2572469 (+) 1140 WP_005094446.1 threonine synthase -
  ACLKM2_RS12240 - 2572524..2573591 (-) 1068 WP_141667085.1 serine hydrolase -
  ACLKM2_RS12245 - 2573811..2574446 (+) 636 WP_005108454.1 response regulator -
  ACLKM2_RS12250 pilS 2574469..2576034 (+) 1566 WP_411686344.1 two-component system sensor histidine kinase NtrB Regulator
  ACLKM2_RS12255 pilR 2576050..2577474 (+) 1425 WP_244782687.1 sigma-54-dependent transcriptional regulator Regulator
  ACLKM2_RS12260 - 2577475..2578647 (-) 1173 WP_180049954.1 S41 family peptidase -
  ACLKM2_RS12265 gpmI 2578679..2580226 (-) 1548 WP_411686345.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59711.94 Da        Isoelectric Point: 6.4513

>NTDB_id=1107065 ACLKM2_RS12250 WP_411686344.1 2574469..2576034(+) (pilS) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
MAQPSSYSALNRYHLGIWYSAYRLLISTGLLLIFLLTYPELTSDYQYPQLYYYALGIWVAINTVQLFALKWIRRLIQPQL
IMIFFVDVCLLSLLTLASNGPNLQIGLLFVITIFSASLLLDAKKALVFTLIAVISIIYQHFIGSIFAFSSLSNISNSALL
AFLFFVVYGTGQIAVRRFQILENLNFSQSLELHRLQNINRYILEQIETGYLVLDENYHVVLSNPAACHLLGIESKYGLEK
FTLYQSQPDLFELIHFETLENGERFQFESQQSRYNIHVQVQKLIVPHQTLTLLVLQDAKKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSEAEQQQLLHQMIGRQATRIDRIIQDTLNMVKNKETHPVPIHLNEFIPLFIQEDLADIRD
QIQFNIDVSLAIQFDEAQFRQILINLIRNAIRHNSADANYIQLNIHPYEHRVWIDIRDFGSGVAIHDQALLFQPFFSTSI
SGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=1107065 ACLKM2_RS12250 WP_411686344.1 2574469..2576034(+) (pilS) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
ATGGCACAACCATCTAGTTACTCTGCTCTCAACCGATATCATCTTGGTATCTGGTATAGCGCTTATCGCCTGCTGATCAG
CACTGGCCTGCTGCTTATTTTTCTACTGACCTACCCCGAACTGACCAGCGACTACCAATATCCGCAGCTGTATTATTATG
CGCTGGGAATCTGGGTAGCAATCAATACGGTACAGCTGTTCGCGTTGAAGTGGATCAGACGTCTGATCCAGCCGCAGCTG
ATCATGATTTTCTTTGTTGATGTCTGCCTATTAAGTTTGCTGACCTTGGCCAGCAATGGTCCGAATCTGCAAATCGGGCT
GCTGTTCGTGATTACCATTTTTTCTGCATCTTTATTATTAGATGCAAAAAAAGCATTGGTCTTCACCCTGATTGCCGTCA
TTAGCATTATCTATCAGCATTTTATCGGCAGTATTTTTGCATTTTCCTCACTTAGCAATATCAGTAATAGCGCCCTGCTG
GCCTTTTTGTTTTTTGTCGTCTATGGCACCGGGCAAATTGCCGTGCGCCGTTTTCAGATTCTGGAAAACCTGAACTTCTC
TCAATCGCTGGAACTTCATCGCTTACAGAATATTAACCGTTATATTCTGGAGCAAATTGAAACCGGTTATCTGGTTCTGG
ATGAAAATTATCATGTGGTACTCAGTAATCCTGCTGCCTGTCATCTGCTTGGGATTGAATCCAAATACGGTCTGGAAAAA
TTTACCTTATACCAGTCACAGCCGGATTTATTTGAACTGATCCATTTTGAAACGCTGGAAAATGGTGAACGCTTTCAGTT
TGAATCCCAGCAAAGTCGCTATAACATTCATGTCCAGGTACAAAAGCTGATTGTACCGCATCAAACCCTAACGCTACTGG
TATTACAGGATGCCAAAAAACTCAATCAGCAAGTGCAACAACTCAAACTTGCCGCACTGGGGCAGCTTTCGGCCAGTATT
GCGCATGAAATTCGTAATCCTCTAGCCGCCATTGTCCAGGCCAATGATTTGTATCTAGACTCGGAAGCTGAACAGCAACA
GCTACTCCACCAGATGATTGGCCGGCAGGCGACCCGGATTGACCGGATTATTCAGGACACACTGAATATGGTCAAAAATA
AAGAAACCCATCCGGTGCCGATTCATCTCAATGAATTTATCCCGTTATTTATCCAGGAAGATCTGGCTGATATTCGTGAT
CAGATTCAATTTAATATTGATGTCTCGCTGGCGATTCAGTTTGATGAGGCACAATTCCGGCAAATCCTGATAAATCTGAT
TCGCAACGCCATCCGTCACAATTCAGCAGATGCCAATTACATTCAGCTGAATATACATCCCTATGAACATCGGGTCTGGA
TTGATATCCGGGATTTCGGCTCAGGTGTAGCCATACACGACCAGGCCCTATTATTTCAACCTTTTTTCAGCACCTCGATT
AGTGGAACCGGATTAGGGCTGTACTTATCACATAGTTTTTGTGAAGCAAATCAGGCACAATTAAACTATATACAACAAGA
ACAGGGCGCATGCTTTCGCATTAGCTGCCAACGTATTACGGTATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.03

96.929

0.553

Multiple sequence alignment