Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACLKM2_RS11455 Genome accession   NZ_CP183899
Coordinates   2410714..2411349 (+) Length   211 a.a.
NCBI ID   WP_074383589.1    Uniprot ID   A0A2H9YQY8
Organism   Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2405714..2416349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM2_RS11445 - 2407833..2408648 (-) 816 WP_179999155.1 NAD-dependent epimerase/dehydratase family protein -
  ACLKM2_RS11450 recG 2408682..2410727 (+) 2046 WP_005094175.1 ATP-dependent DNA helicase RecG -
  ACLKM2_RS11455 comF 2410714..2411349 (+) 636 WP_074383589.1 ComF family protein Machinery gene
  ACLKM2_RS11460 - 2411353..2411754 (-) 402 WP_411686295.1 NUDIX hydrolase -
  ACLKM2_RS11465 - 2411786..2412376 (-) 591 WP_411686296.1 TIGR00730 family Rossman fold protein -
  ACLKM2_RS11470 - 2412529..2413542 (+) 1014 WP_005168743.1 CorA family divalent cation transporter -
  ACLKM2_RS11475 - 2413868..2414158 (-) 291 WP_005168745.1 STAS domain-containing protein -
  ACLKM2_RS11480 - 2414174..2414806 (-) 633 WP_005094187.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ACLKM2_RS11485 - 2414825..2415502 (-) 678 WP_005094188.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACLKM2_RS11490 mlaE 2415502..2416281 (-) 780 WP_100355139.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24215.36 Da        Isoelectric Point: 8.9885

>NTDB_id=1107054 ACLKM2_RS11455 WP_074383589.1 2410714..2411349(+) (comF) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
MPMFKLLAQGISKLNTLQPCQLCQTDYQSIYSVCQDCWQQLPWIHQTIQRQEMQFQIACDYAYPMDRLIQLFKYEQKLHL
QNLLAGTLLSLELPKVSAIVPMPISTERLAERGYNQSLVLAKHVAKKLNVPIWQPVSRLKQHSQKGLSRLERIEDIQSQF
QISTPSNIRYRRVLIIDDVVTTGSSILALTRKLEELGCQKIYAACLAGAQI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1107054 ACLKM2_RS11455 WP_074383589.1 2410714..2411349(+) (comF) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
ATGCCTATGTTTAAATTACTGGCACAGGGAATCTCCAAGCTGAATACGCTTCAGCCCTGCCAGTTGTGTCAGACTGATTA
TCAGAGCATTTATTCAGTCTGTCAGGATTGCTGGCAGCAGTTGCCGTGGATACATCAAACCATTCAGCGTCAGGAAATGC
AGTTTCAGATTGCCTGCGATTATGCCTACCCAATGGATCGGTTGATTCAGCTGTTTAAATATGAACAGAAGCTGCATCTG
CAAAATTTACTGGCCGGTACGCTGTTGAGTTTAGAGCTACCCAAAGTCAGTGCAATAGTCCCGATGCCGATCTCGACTGA
ACGCCTGGCCGAACGCGGTTATAATCAATCTCTGGTGCTGGCCAAGCATGTGGCGAAAAAATTGAATGTTCCCATCTGGC
AACCTGTTAGCCGGCTGAAACAGCATTCACAAAAAGGCTTAAGCCGTCTGGAAAGAATCGAAGATATCCAGTCGCAATTT
CAGATCAGTACACCGTCTAATATTCGTTACCGACGCGTGCTGATTATTGATGATGTGGTGACAACCGGCAGTTCGATTCT
AGCGCTCACTCGAAAACTTGAAGAGCTAGGCTGTCAAAAAATTTATGCAGCCTGTCTGGCAGGCGCGCAAATCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H9YQY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

60.096

98.578

0.592
  comF Acinetobacter baumannii strain A118

59.615

98.578

0.588

Multiple sequence alignment