Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACLKM3_RS13025 Genome accession   NZ_CP183897
Coordinates   2680504..2682069 (+) Length   521 a.a.
NCBI ID   WP_019838140.1    Uniprot ID   -
Organism   Acinetobacter towneri strain M10_NDM     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2675504..2687069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM3_RS13005 - 2675898..2677202 (+) 1305 WP_019838137.1 homoserine dehydrogenase -
  ACLKM3_RS13010 thrC 2677260..2678399 (+) 1140 WP_019838138.1 threonine synthase -
  ACLKM3_RS13015 - 2678514..2679602 (-) 1089 WP_152421057.1 serine hydrolase -
  ACLKM3_RS13020 - 2679818..2680453 (+) 636 WP_004975702.1 response regulator -
  ACLKM3_RS13025 pilS 2680504..2682069 (+) 1566 WP_019838140.1 sensor histidine kinase Regulator
  ACLKM3_RS13030 pilR 2682143..2683576 (+) 1434 WP_019838141.1 sigma-54-dependent transcriptional regulator Regulator
  ACLKM3_RS13035 - 2683627..2684790 (-) 1164 WP_019838142.1 S41 family peptidase -
  ACLKM3_RS13040 gpmI 2684815..2686362 (-) 1548 WP_019838143.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59186.75 Da        Isoelectric Point: 7.0183

>NTDB_id=1107026 ACLKM3_RS13025 WP_019838140.1 2680504..2682069(+) (pilS) [Acinetobacter towneri strain M10_NDM]
MPELKQYSELNQYHLGMWYGTYRLLIAFCLLLITLLTFQQLGAQYQYPGLYLYTLVCYFIFNCLQLISYKSIPFKITQQL
TLFFAVDIIALSSLTFASDGPNLYLSLLFVITIFAASLLLQKRKALAITLIAMIMVIYQHFVGSLLDFSSLNNISQSALL
AFLFGVVYGSGRIAVRRFQLLENLNFSQSLELNRLQNINRYILEQTEMGYLVLDDNCHVVLSNPAACHLLGIHPKYAHAT
YPLYKVQPDLFDLFKFDQLQDGEKFQFESQLSHFHVHIQVQKLKVPHQTLTLLALQDGRKINQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANNLFTGSDAAQQQLLSDMISKQATRIDKIIHDTLSMVKNKQTMPVAIQLNQFLPQFIQEDLPDAAS
QIQLTLTEQLSILFDESQLRQVLINLIRNAIRHNAAQQPIEITVYPEATYIYIDVRDFGAGVASQDLLYLFQPFFSTEIN
GTGLGLYLSHSFCEANQAKLSYVEQEQGACFRMKCLRAIGH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=1107026 ACLKM3_RS13025 WP_019838140.1 2680504..2682069(+) (pilS) [Acinetobacter towneri strain M10_NDM]
ATGCCAGAATTAAAACAATATTCTGAGTTAAATCAGTATCATCTTGGCATGTGGTATGGTACTTACCGACTGCTGATTGC
CTTTTGTTTGCTGCTGATTACCCTACTCACCTTTCAGCAGCTTGGCGCACAATATCAGTACCCAGGTTTATATCTGTACA
CCTTGGTTTGTTATTTTATTTTTAACTGCTTGCAACTGATCAGCTATAAATCCATCCCCTTTAAAATCACGCAACAACTG
ACCCTATTTTTTGCTGTTGATATTATCGCGCTGAGTAGCCTGACTTTTGCCAGTGATGGACCTAATTTATATTTAAGCCT
ACTGTTTGTAATCACGATTTTTGCGGCTTCACTCTTGCTGCAAAAGCGTAAAGCCTTAGCAATTACTCTAATCGCGATGA
TTATGGTGATTTATCAACACTTTGTTGGGAGTTTGCTGGACTTTTCATCACTCAATAATATTAGTCAAAGTGCGCTTTTG
GCATTTTTATTTGGGGTGGTTTATGGCAGCGGACGTATTGCTGTACGACGTTTCCAACTTTTGGAGAATCTAAACTTTTC
ACAGTCTTTGGAATTAAATCGCCTACAAAATATCAACCGTTATATTTTAGAACAAACCGAAATGGGCTATTTAGTTTTAG
ATGACAATTGCCATGTCGTCCTTAGCAACCCTGCCGCCTGTCATCTGCTCGGAATTCATCCCAAATATGCACACGCGACT
TATCCATTGTATAAAGTTCAGCCCGATTTATTTGATCTGTTCAAATTTGATCAGTTGCAGGATGGAGAAAAGTTTCAATT
CGAATCGCAACTGAGTCATTTTCATGTGCACATTCAGGTCCAAAAACTCAAAGTGCCACATCAAACGCTGACTTTATTGG
CGCTGCAGGATGGACGTAAAATTAATCAACAAGTACAGCAACTCAAACTAGCCGCCTTAGGGCAACTCTCTGCCAGTATT
GCGCATGAAATTCGCAATCCTTTAGCAGCGATTGTACAAGCCAACAATTTATTTACAGGCAGTGATGCTGCACAGCAACA
ATTGCTGTCCGACATGATCAGCAAACAAGCGACACGAATTGATAAAATTATTCATGACACGCTGAGCATGGTTAAAAACA
AACAAACTATGCCTGTCGCGATTCAGCTCAATCAGTTTTTGCCGCAATTCATTCAGGAAGATTTACCTGATGCAGCGAGT
CAAATTCAACTTACACTGACCGAACAACTGAGCATTCTGTTTGATGAATCACAATTACGCCAAGTGCTGATTAACCTGAT
TCGTAATGCTATTCGACACAATGCTGCACAGCAGCCCATTGAGATTACGGTCTATCCGGAAGCAACTTATATTTATATAG
ATGTGCGGGATTTTGGTGCAGGTGTCGCCAGTCAAGATCTCCTCTATCTATTCCAGCCATTTTTCAGTACCGAAATCAAT
GGAACTGGTTTAGGATTGTATCTATCGCATAGTTTTTGCGAGGCCAATCAAGCCAAGCTGAGCTATGTAGAACAAGAACA
AGGCGCATGTTTCAGGATGAAATGTCTACGCGCCATTGGCCATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.406

96.929

0.576

Multiple sequence alignment