Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACLKM3_RS01600 Genome accession   NZ_CP183897
Coordinates   346389..347024 (-) Length   211 a.a.
NCBI ID   WP_236162857.1    Uniprot ID   -
Organism   Acinetobacter towneri strain M10_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341389..352024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM3_RS01565 mlaE 341599..342378 (+) 780 WP_019836882.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACLKM3_RS01570 - 342378..343055 (+) 678 WP_230245426.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACLKM3_RS01575 - 343071..343706 (+) 636 WP_004974651.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ACLKM3_RS01580 - 343719..344006 (+) 288 WP_019836879.1 STAS domain-containing protein -
  ACLKM3_RS01585 - 344125..345138 (-) 1014 WP_230245424.1 CorA family divalent cation transporter -
  ACLKM3_RS01590 - 345293..345895 (+) 603 WP_019836877.1 TIGR00730 family Rossman fold protein -
  ACLKM3_RS01595 - 345897..346310 (+) 414 WP_019836876.1 NUDIX hydrolase -
  ACLKM3_RS01600 comF 346389..347024 (-) 636 WP_236162857.1 ComF family protein Machinery gene
  ACLKM3_RS01605 recG 347043..349088 (-) 2046 WP_236162858.1 ATP-dependent DNA helicase RecG -
  ACLKM3_RS01610 - 349125..349958 (+) 834 WP_236162859.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24598.65 Da        Isoelectric Point: 9.7522

>NTDB_id=1107001 ACLKM3_RS01600 WP_236162857.1 346389..347024(-) (comF) [Acinetobacter towneri strain M10_NDM]
MIQPINLAQRGIQWLRQLQPCQLCHSDTQWQHSVCQTCWQELPWRSQAVQRQEMQIQVAFDYHYPINRIIQQFKYEQQLQ
YQLLLVGALKQLSYPKIQAIVPMPISSTRLTERGYNQSLLLAKGLARYLDVPIWQPVTRLQKHAQKGLSRLERLEDIQQQ
FQIQAAPKIRYRRVLIVDDVVTTGSSIHALKQQLLKLGCQKVEAVCLASAE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1107001 ACLKM3_RS01600 WP_236162857.1 346389..347024(-) (comF) [Acinetobacter towneri strain M10_NDM]
ATGATTCAGCCAATCAACCTAGCACAACGCGGCATACAATGGCTGCGCCAACTGCAACCGTGTCAGCTCTGCCATAGCGA
CACGCAATGGCAACATTCGGTCTGTCAAACCTGTTGGCAAGAATTACCGTGGCGTAGCCAAGCAGTACAACGTCAAGAAA
TGCAGATTCAAGTCGCCTTTGATTATCACTATCCAATTAATCGCATCATTCAACAATTTAAATATGAACAGCAGTTACAA
TACCAACTGCTTTTGGTAGGTGCGCTGAAACAATTGTCTTATCCTAAAATTCAAGCCATTGTACCGATGCCAATTTCCTC
TACCCGCCTGACTGAACGCGGTTACAATCAATCTTTATTGTTGGCAAAAGGACTGGCGCGGTATTTAGATGTTCCTATTT
GGCAGCCTGTGACCCGCTTGCAAAAGCACGCGCAAAAAGGCTTAAGTCGCTTAGAACGATTAGAAGACATCCAACAGCAA
TTTCAAATTCAGGCTGCGCCTAAAATCCGTTATCGTCGGGTTTTAATTGTGGATGATGTGGTCACAACGGGCAGTTCAAT
TCATGCACTCAAACAACAATTACTCAAGCTTGGCTGTCAAAAAGTCGAGGCGGTTTGTCTCGCCAGTGCCGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.658

91.469

0.564
  comF Acinetobacter baumannii D1279779

61.14

91.469

0.559

Multiple sequence alignment