Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACLKM4_RS12400 Genome accession   NZ_CP183895
Coordinates   2591442..2592077 (+) Length   211 a.a.
NCBI ID   WP_104499964.1    Uniprot ID   -
Organism   Acinetobacter indicus strain D1_NDM_tet(X3)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2586442..2597077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM4_RS12390 - 2588561..2589376 (-) 816 WP_168398953.1 NAD(P)H-binding protein -
  ACLKM4_RS12395 recG 2589410..2591455 (+) 2046 WP_005180314.1 ATP-dependent DNA helicase RecG -
  ACLKM4_RS12400 comF 2591442..2592077 (+) 636 WP_104499964.1 ComF family protein Machinery gene
  ACLKM4_RS12405 - 2592100..2592501 (-) 402 WP_034597959.1 NUDIX hydrolase -
  ACLKM4_RS12410 - 2592504..2593097 (-) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  ACLKM4_RS12415 - 2593250..2594263 (+) 1014 WP_005180320.1 CorA family divalent cation transporter -
  ACLKM4_RS12420 - 2594403..2594690 (-) 288 WP_045795311.1 STAS domain-containing protein -
  ACLKM4_RS12425 - 2594702..2595334 (-) 633 WP_005180322.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ACLKM4_RS12430 - 2595353..2596024 (-) 672 WP_075168244.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACLKM4_RS12435 mlaE 2596024..2596803 (-) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24374.41 Da        Isoelectric Point: 9.2130

>NTDB_id=1106985 ACLKM4_RS12400 WP_104499964.1 2591442..2592077(+) (comF) [Acinetobacter indicus strain D1_NDM_tet(X3)]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QPLLAGSLCELAYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1106985 ACLKM4_RS12400 WP_104499964.1 2591442..2592077(+) (comF) [Acinetobacter indicus strain D1_NDM_tet(X3)]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAATTGCATTAT
CAGCCTTTACTGGCGGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55

Multiple sequence alignment