Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACLKM4_RS06265 | Genome accession | NZ_CP183895 |
| Coordinates | 1303544..1303888 (+) | Length | 114 a.a. |
| NCBI ID | WP_242898261.1 | Uniprot ID | - |
| Organism | Acinetobacter indicus strain D1_NDM_tet(X3) | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1298544..1308888
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLKM4_RS06235 | kdsB | 1299236..1300000 (+) | 765 | WP_104488987.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ACLKM4_RS06240 | - | 1300009..1300992 (+) | 984 | WP_075166783.1 | DNA polymerase III subunit delta' | - |
| ACLKM4_RS06245 | - | 1301004..1301345 (+) | 342 | WP_005177501.1 | PilZ domain-containing protein | - |
| ACLKM4_RS06250 | - | 1301375..1302148 (+) | 774 | WP_411687562.1 | TatD family hydrolase | - |
| ACLKM4_RS06255 | - | 1302209..1302823 (+) | 615 | WP_075166784.1 | TetR/AcrR family transcriptional regulator | - |
| ACLKM4_RS06260 | - | 1302829..1303401 (+) | 573 | WP_411687561.1 | type II secretion system protein | - |
| ACLKM4_RS06265 | xcpV | 1303544..1303888 (+) | 345 | WP_242898261.1 | type II secretion system protein | Machinery gene |
| ACLKM4_RS06270 | xcpW | 1303885..1304520 (+) | 636 | WP_152342358.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACLKM4_RS06275 | gspK | 1304566..1305513 (+) | 948 | WP_075174516.1 | type II secretion system minor pseudopilin GspK | - |
| ACLKM4_RS06280 | - | 1305661..1306257 (+) | 597 | WP_005177512.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| ACLKM4_RS06285 | ung | 1306299..1307012 (+) | 714 | WP_005177514.1 | uracil-DNA glycosylase | - |
| ACLKM4_RS06290 | - | 1307009..1308133 (+) | 1125 | WP_005177517.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACLKM4_RS06295 | tadA | 1308137..1308658 (+) | 522 | WP_104488986.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 114 a.a. Molecular weight: 12600.34 Da Isoelectric Point: 6.2041
>NTDB_id=1106972 ACLKM4_RS06265 WP_242898261.1 1303544..1303888(+) (xcpV) [Acinetobacter indicus strain D1_NDM_tet(X3)]
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ
Nucleotide
Download Length: 345 bp
>NTDB_id=1106972 ACLKM4_RS06265 WP_242898261.1 1303544..1303888(+) (xcpV) [Acinetobacter indicus strain D1_NDM_tet(X3)]
ATGGTGGCACTGGCGATTTTTGCTACAGCTGCTATGGCGCTGACTCAAGTGGCCATGCAATATACCCAGTCGACCTCTCA
TGCCATTTTAAGAACCAAAGCGCAGTTTGTGGCCTTAAACGAACAGGCTCTAATGGAAATCCAGCAGGACTGGCTGACGG
GTACGCAATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCGACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCATCGGGTGGCGCAATGA
ATGGTGGCACTGGCGATTTTTGCTACAGCTGCTATGGCGCTGACTCAAGTGGCCATGCAATATACCCAGTCGACCTCTCA
TGCCATTTTAAGAACCAAAGCGCAGTTTGTGGCCTTAAACGAACAGGCTCTAATGGAAATCCAGCAGGACTGGCTGACGG
GTACGCAATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCGACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCATCGGGTGGCGCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
76.786 |
98.246 |
0.754 |