Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ACLKM4_RS06270 Genome accession   NZ_CP183895
Coordinates   1303885..1304520 (+) Length   211 a.a.
NCBI ID   WP_152342358.1    Uniprot ID   -
Organism   Acinetobacter indicus strain D1_NDM_tet(X3)     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1298885..1309520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM4_RS06235 kdsB 1299236..1300000 (+) 765 WP_104488987.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLKM4_RS06240 - 1300009..1300992 (+) 984 WP_075166783.1 DNA polymerase III subunit delta' -
  ACLKM4_RS06245 - 1301004..1301345 (+) 342 WP_005177501.1 PilZ domain-containing protein -
  ACLKM4_RS06250 - 1301375..1302148 (+) 774 WP_411687562.1 TatD family hydrolase -
  ACLKM4_RS06255 - 1302209..1302823 (+) 615 WP_075166784.1 TetR/AcrR family transcriptional regulator -
  ACLKM4_RS06260 - 1302829..1303401 (+) 573 WP_411687561.1 type II secretion system protein -
  ACLKM4_RS06265 xcpV 1303544..1303888 (+) 345 WP_242898261.1 type II secretion system protein Machinery gene
  ACLKM4_RS06270 xcpW 1303885..1304520 (+) 636 WP_152342358.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ACLKM4_RS06275 gspK 1304566..1305513 (+) 948 WP_075174516.1 type II secretion system minor pseudopilin GspK -
  ACLKM4_RS06280 - 1305661..1306257 (+) 597 WP_005177512.1 6-pyruvoyl trahydropterin synthase family protein -
  ACLKM4_RS06285 ung 1306299..1307012 (+) 714 WP_005177514.1 uracil-DNA glycosylase -
  ACLKM4_RS06290 - 1307009..1308133 (+) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  ACLKM4_RS06295 tadA 1308137..1308658 (+) 522 WP_104488986.1 tRNA adenosine(34) deaminase TadA -
  ACLKM4_RS06300 - 1308716..1309147 (+) 432 WP_104473640.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24148.46 Da        Isoelectric Point: 7.2000

>NTDB_id=1106973 ACLKM4_RS06270 WP_152342358.1 1303885..1304520(+) (xcpW) [Acinetobacter indicus strain D1_NDM_tet(X3)]
MIKAKRGFTLVELLVAIAIFAVLSALGWKVFDYLVKVKDRNQWHEQQLEGLQGAYQQILRDSIQIVPLTANINNDIQPAL
VLQNGRFNFSKTGVTDPLQQGIAPTERIEYQYRADEQKLYRLKYANLHQSGQDQPVSSVLLDNVSQFQVSVLNPQELSNW
PDSSIDLNDNQQKRKLPKGIKINLTVQDVQYEWIFSLLNTDFLKSDNKTTS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1106973 ACLKM4_RS06270 WP_152342358.1 1303885..1304520(+) (xcpW) [Acinetobacter indicus strain D1_NDM_tet(X3)]
ATGATTAAGGCTAAACGCGGATTTACTCTGGTCGAGCTGCTGGTGGCCATTGCCATCTTTGCGGTGCTGTCTGCCTTAGG
CTGGAAAGTATTTGATTATCTGGTCAAGGTCAAAGACCGTAACCAGTGGCATGAACAGCAGTTAGAAGGATTGCAGGGTG
CCTATCAGCAAATCTTGCGTGACAGCATTCAGATTGTACCGCTGACGGCCAACATCAATAATGATATTCAGCCAGCTTTG
GTATTACAAAACGGCCGTTTTAATTTTAGCAAGACCGGTGTGACCGATCCTTTGCAGCAGGGCATTGCCCCCACTGAACG
GATTGAATATCAGTACCGGGCCGACGAACAAAAACTGTATCGTCTGAAATATGCCAATTTGCATCAATCCGGGCAGGATC
AGCCGGTTTCCAGCGTATTATTGGACAATGTTAGCCAGTTTCAGGTTAGTGTGCTGAATCCGCAGGAACTGAGTAACTGG
CCAGACAGCAGTATTGACTTAAATGATAATCAACAAAAACGCAAACTGCCAAAAGGCATTAAAATAAATTTAACCGTACA
AGATGTACAATATGAATGGATTTTTAGCCTGTTAAATACTGACTTCCTGAAATCAGACAATAAAACCACATCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)

Type II secretion system (T2SS), protein J (T2SSJ)

(60-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

61.735

92.891

0.573

Multiple sequence alignment