Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACLKM6_RS12205 Genome accession   NZ_CP183890
Coordinates   2540436..2541071 (+) Length   211 a.a.
NCBI ID   WP_411686699.1    Uniprot ID   -
Organism   Acinetobacter indicus strain D11_NDM_tet(X5)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2535436..2546071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM6_RS12195 - 2537555..2538370 (-) 816 WP_104488169.1 NAD(P)H-binding protein -
  ACLKM6_RS12200 recG 2538404..2540449 (+) 2046 WP_016658521.1 ATP-dependent DNA helicase RecG -
  ACLKM6_RS12205 comF 2540436..2541071 (+) 636 WP_411686699.1 ComF family protein Machinery gene
  ACLKM6_RS12210 - 2541094..2541495 (-) 402 WP_411686698.1 NUDIX hydrolase -
  ACLKM6_RS12215 - 2541498..2542091 (-) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  ACLKM6_RS12220 - 2542244..2543257 (+) 1014 WP_005180320.1 CorA family divalent cation transporter -
  ACLKM6_RS12225 - 2543394..2543681 (-) 288 WP_045795311.1 STAS domain-containing protein -
  ACLKM6_RS12230 - 2543693..2544325 (-) 633 WP_005180322.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ACLKM6_RS12235 - 2544344..2545015 (-) 672 WP_075168244.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACLKM6_RS12240 mlaE 2545015..2545794 (-) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24366.34 Da        Isoelectric Point: 9.0245

>NTDB_id=1106902 ACLKM6_RS12205 WP_411686699.1 2540436..2541071(+) (comF) [Acinetobacter indicus strain D11_NDM_tet(X5)]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYQVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QSLLAGSLCELTYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1106902 ACLKM6_RS12205 WP_411686699.1 2540436..2541071(+) (comF) [Acinetobacter indicus strain D11_NDM_tet(X5)]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCAGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55

Multiple sequence alignment