Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACN6MW_RS03260 Genome accession   NZ_CP183886
Coordinates   667181..668950 (-) Length   589 a.a.
NCBI ID   WP_419874206.1    Uniprot ID   -
Organism   Candidatus Pristimantibacillus sp. PTI5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 662181..673950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MW_RS03245 (ACN6MW_03245) - 662325..663374 (-) 1050 WP_419874204.1 ABC transporter substrate-binding protein -
  ACN6MW_RS03250 (ACN6MW_03250) - 663732..665192 (+) 1461 WP_419874205.1 MFS transporter -
  ACN6MW_RS03255 (ACN6MW_03255) rcrQ 665401..667137 (-) 1737 WP_419876260.1 ABC transporter ATP-binding protein Regulator
  ACN6MW_RS03260 (ACN6MW_03260) rcrP 667181..668950 (-) 1770 WP_419874206.1 ABC transporter ATP-binding protein Regulator
  ACN6MW_RS03265 (ACN6MW_03265) - 669048..669482 (-) 435 WP_419874207.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACN6MW_RS03270 (ACN6MW_03270) - 669744..672554 (-) 2811 WP_419874208.1 sugar-binding domain-containing protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 64777.29 Da        Isoelectric Point: 9.1208

>NTDB_id=1106782 ACN6MW_RS03260 WP_419874206.1 667181..668950(-) (rcrP) [Candidatus Pristimantibacillus sp. PTI5]
MLKILKYFNPKNVWFIIISTAFIVLQVWLDLKLPDYLAEITKLVQTEGNSLSEVWEPGAYMMMCAIGSLLASFIVVYLVA
QSAASLAKRLRGLLFDKVESFSMAEMNKFSTASLITRSTNDITQVQTIVAMGLQVMIKAPILAVWAVVKISSKSWQWTLS
SGVSVALLLLMIAIVILFAMPKFRAIQGLTDQLNRVTRESLTGLRVIRAYNAAPSQEAKFEHANKELTDANLFTSRLMAL
MMPVMSLIMSGLSLAIYWIGAYLINGADTAARLGLFSDMVIFSSYAMQIVMAFMMLSMVFFMLPRASVSAKRVMEVLNTE
PSIKDGSSKSKSSNSAKAGEIEFRNVSFKYADSDEYVLQDISFVARRGQTVAFIGSTGSGKSTLMNLIPRFYDVTDGEVL
VGGMNVKDYSLRDLHNKLGYVPQKAVLFTGTVTSNVAYGDNGQAAGSADDVKKAVAIAKGTEFVEKLEGGYEGSVSQGGT
NLSGGQKQRLSIARAVFRKPDIYIFDDSFSALDYKTDRQLRSMLKQETSDATNLIVGQRIGTIKDADLILVLDEGRIVGR
GTHQELLQTCEVYRQIANSQLSKEELEIG

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=1106782 ACN6MW_RS03260 WP_419874206.1 667181..668950(-) (rcrP) [Candidatus Pristimantibacillus sp. PTI5]
ATGCTTAAGATTTTGAAGTATTTTAATCCGAAAAATGTGTGGTTTATTATCATCAGTACTGCGTTTATCGTGCTCCAGGT
ATGGCTCGACTTGAAGCTTCCCGATTATTTGGCGGAAATTACGAAGCTGGTACAGACCGAAGGCAATTCCTTGAGTGAGG
TGTGGGAGCCCGGCGCTTATATGATGATGTGCGCGATCGGGAGCTTGCTCGCTTCCTTCATCGTCGTCTATCTCGTCGCG
CAGAGCGCCGCGTCGCTTGCTAAGAGACTAAGGGGCCTGCTCTTCGACAAGGTCGAATCGTTCTCGATGGCCGAGATGAA
CAAATTCTCGACGGCGAGTCTCATTACGCGCTCCACGAACGATATTACGCAAGTGCAAACGATCGTGGCGATGGGTCTTC
AGGTTATGATCAAGGCGCCTATTTTGGCAGTCTGGGCGGTTGTGAAGATCTCCAGCAAGAGCTGGCAATGGACGCTCTCA
TCCGGCGTTTCGGTTGCGCTGCTTCTGCTCATGATCGCGATCGTCATTTTGTTCGCCATGCCGAAGTTCAGAGCGATTCA
AGGATTAACGGATCAATTGAACCGGGTAACGAGAGAAAGCTTGACTGGCCTGCGCGTTATCCGCGCCTATAATGCAGCTC
CGAGCCAGGAAGCGAAGTTCGAACACGCGAACAAAGAACTGACCGATGCGAATCTGTTCACGAGCCGTTTAATGGCTTTA
ATGATGCCGGTTATGAGTCTCATCATGAGCGGATTAAGCTTGGCGATCTATTGGATCGGCGCTTATCTGATCAATGGGGC
GGATACGGCTGCAAGGCTCGGCTTGTTCAGCGACATGGTCATCTTCTCTTCCTATGCGATGCAGATCGTCATGGCTTTCA
TGATGCTGTCGATGGTATTCTTCATGCTGCCGCGGGCGTCGGTATCCGCCAAGCGTGTCATGGAAGTATTGAATACGGAA
CCTAGCATCAAGGACGGCAGCTCGAAATCGAAATCTTCAAACAGTGCCAAGGCAGGAGAGATAGAATTCCGAAATGTCAG
CTTCAAGTATGCGGATTCGGATGAATATGTGCTTCAAGACATCAGTTTCGTTGCGCGTAGGGGCCAGACGGTTGCGTTCA
TCGGCTCGACGGGGAGCGGCAAGAGTACGCTCATGAACTTGATTCCAAGATTTTACGACGTGACGGACGGAGAGGTGCTC
GTAGGGGGCATGAATGTCAAGGATTACTCGCTCCGGGATCTGCACAACAAGCTGGGCTACGTTCCTCAGAAAGCGGTATT
GTTCACGGGAACCGTGACATCCAACGTCGCTTATGGCGATAACGGGCAAGCGGCAGGCTCGGCGGACGATGTGAAGAAAG
CGGTAGCGATCGCCAAGGGCACAGAGTTCGTCGAGAAGCTCGAGGGTGGATACGAGGGCAGCGTCTCGCAAGGCGGAACG
AACTTGTCTGGCGGTCAGAAGCAGAGGCTATCCATCGCCAGGGCGGTGTTCCGCAAACCCGACATTTACATTTTCGACGA
TTCCTTCTCTGCGCTTGATTACAAGACAGACCGTCAGCTGCGCTCCATGCTGAAGCAAGAAACATCAGACGCTACCAACC
TGATTGTGGGACAGCGAATCGGAACGATCAAGGATGCCGATCTTATCCTCGTTCTCGACGAAGGCAGGATCGTAGGAAGA
GGTACGCATCAAGAGCTGCTGCAGACCTGCGAGGTCTATCGTCAAATCGCTAACTCTCAGTTGTCGAAGGAGGAGCTCGA
AATTGGCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-293)

ABC transporter (ABC_tran)

(358-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.156

100

0.543

Multiple sequence alignment