Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACN6MW_RS03255 Genome accession   NZ_CP183886
Coordinates   665401..667137 (-) Length   578 a.a.
NCBI ID   WP_419876260.1    Uniprot ID   -
Organism   Candidatus Pristimantibacillus sp. PTI5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 660401..672137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MW_RS03240 (ACN6MW_03240) - 660719..662230 (-) 1512 WP_419874203.1 sugar ABC transporter ATP-binding protein -
  ACN6MW_RS03245 (ACN6MW_03245) - 662325..663374 (-) 1050 WP_419874204.1 ABC transporter substrate-binding protein -
  ACN6MW_RS03250 (ACN6MW_03250) - 663732..665192 (+) 1461 WP_419874205.1 MFS transporter -
  ACN6MW_RS03255 (ACN6MW_03255) rcrQ 665401..667137 (-) 1737 WP_419876260.1 ABC transporter ATP-binding protein Regulator
  ACN6MW_RS03260 (ACN6MW_03260) rcrP 667181..668950 (-) 1770 WP_419874206.1 ABC transporter ATP-binding protein Regulator
  ACN6MW_RS03265 (ACN6MW_03265) - 669048..669482 (-) 435 WP_419874207.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 63699.99 Da        Isoelectric Point: 6.2401

>NTDB_id=1106781 ACN6MW_RS03255 WP_419876260.1 665401..667137(-) (rcrQ) [Candidatus Pristimantibacillus sp. PTI5]
MGKLVAYCRPYLPLIAVALLLSVVGTIFTIIGPSQLEAMTDHITAGLMGEIDMDAIARIGILLSVLYGLSVVFSYFQGYI
MATVTQKVSRGLRTRISQKINKLPLKYFDSNSNGDVLSRVTNDIDTIGQTMNQSVGMLVTSVTMLVGSLVMMFYTNVWMT
ITAILSTFLGFAFMTVMIKKSQAHFVHQQANLGAMNGHVEEIFSGYNVVKVYNGERKAKKTFNEINDKLYESSWKSQFLS
GLTMPLMMFVGNFSYVAVCIVGGALAMNDHISFGVIVAFMLYVRLFSQPLGQIAQAATTMQSTAAASARVFEFLEEKELE
DESSKSKVLKDVKGQVEFRNVAFGYDPEKLIIHDFSARALPGQKIAIVGPTGAGKTTIVNLLMRFYELNGGEIAIDGVPI
HELPRENVHEQFCMVLQDTWLFEGTIKENIVFNKLGVTDAMVKDVCKAVGIDHFIRTLTHGYDTVLNEQVNLSAGQKQLI
TIARALIANAPLLILDEATSSVDTRTELLIQEAMDRLMAGRTSFVIAHRLSTIKNADIILVMKDGDIIESGNHRDLLAAN
GFYADLYNSQFENAEAAL

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1106781 ACN6MW_RS03255 WP_419876260.1 665401..667137(-) (rcrQ) [Candidatus Pristimantibacillus sp. PTI5]
ATGGGCAAGCTGGTCGCGTATTGCAGGCCGTATCTTCCTCTTATTGCCGTAGCTTTACTGCTGTCCGTCGTGGGCACGAT
ATTTACGATTATCGGACCAAGTCAGCTGGAAGCTATGACCGATCACATCACCGCGGGCTTAATGGGCGAGATCGACATGG
ACGCGATTGCCCGCATCGGCATTCTGCTCTCCGTCCTGTACGGATTAAGCGTTGTCTTCTCGTACTTCCAAGGCTACATC
ATGGCTACGGTAACGCAGAAGGTATCGAGAGGGTTGCGTACTCGCATTTCGCAGAAGATCAATAAGCTTCCGCTCAAGTA
TTTCGACTCCAATAGCAACGGCGACGTGCTGAGCCGCGTGACGAACGACATCGATACGATTGGGCAAACGATGAATCAGA
GCGTCGGGATGCTTGTAACATCTGTTACGATGCTGGTCGGCTCCTTGGTTATGATGTTCTACACGAATGTATGGATGACG
ATCACGGCGATCTTGTCGACCTTCCTGGGATTTGCCTTCATGACCGTGATGATCAAAAAATCGCAAGCGCATTTCGTCCA
CCAACAAGCGAACTTGGGAGCGATGAACGGCCACGTCGAGGAAATCTTCTCGGGTTACAATGTCGTTAAGGTCTATAATG
GGGAGCGGAAGGCGAAGAAAACCTTTAACGAAATTAACGATAAATTATATGAAAGCTCTTGGAAATCGCAATTTCTATCC
GGCTTGACGATGCCGCTCATGATGTTCGTCGGCAACTTCAGCTATGTGGCGGTTTGTATTGTCGGTGGCGCATTAGCGAT
GAACGATCACATTTCGTTCGGTGTCATCGTCGCCTTCATGCTTTATGTCCGGCTGTTCTCGCAGCCTCTAGGACAGATCG
CGCAGGCAGCAACAACAATGCAATCGACTGCTGCAGCATCCGCGCGCGTATTCGAATTCCTGGAGGAGAAAGAGCTCGAG
GACGAAAGCAGCAAATCGAAGGTGCTTAAGGATGTTAAGGGACAAGTCGAGTTCCGGAACGTGGCCTTCGGGTATGATCC
CGAAAAGCTGATCATCCATGATTTCTCCGCGCGGGCACTGCCCGGCCAGAAGATTGCCATCGTTGGCCCAACGGGTGCGG
GGAAGACGACGATCGTCAACCTGCTCATGCGGTTCTATGAGTTGAACGGCGGAGAAATCGCCATCGACGGCGTTCCGATT
CATGAGCTTCCTCGGGAAAACGTGCATGAGCAGTTCTGTATGGTGCTGCAGGATACGTGGCTGTTTGAGGGAACGATCAA
AGAAAATATCGTCTTCAACAAACTAGGGGTTACCGATGCCATGGTGAAGGACGTCTGCAAGGCTGTCGGCATTGACCATT
TTATCCGGACGTTGACGCACGGCTATGACACGGTATTGAACGAGCAAGTAAACTTATCCGCAGGGCAGAAGCAGTTGATT
ACAATTGCCAGGGCTTTGATCGCGAACGCCCCGCTTCTCATCCTCGACGAGGCGACGAGCTCCGTAGATACAAGAACGGA
GCTGCTAATACAGGAAGCGATGGACCGGCTGATGGCGGGACGGACCTCATTTGTTATCGCACACAGGCTGTCTACGATCA
AGAATGCCGACATCATTCTCGTTATGAAGGACGGAGATATTATCGAGAGCGGCAATCACCGGGACCTGCTTGCGGCAAAC
GGCTTCTACGCCGATTTGTACAACAGCCAGTTCGAGAATGCGGAAGCGGCTCTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(355-500)

ABC transporter transmembrane region (ABC_membrane)

(17-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.37

98.789

0.587

Multiple sequence alignment