Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACN6MT_RS26395 Genome accession   NZ_CP183883
Coordinates   5377926..5379743 (-) Length   605 a.a.
NCBI ID   WP_419888703.1    Uniprot ID   -
Organism   Neobacillus niacini strain BE6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 5372926..5384743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MT_RS26360 (ACN6MT_26360) - 5373537..5374337 (-) 801 WP_063251436.1 NAD kinase -
  ACN6MT_RS26365 (ACN6MT_26365) - 5374378..5375016 (-) 639 WP_034673971.1 GTP pyrophosphokinase -
  ACN6MT_RS26370 (ACN6MT_26370) - 5375048..5375407 (-) 360 WP_419888698.1 hypothetical protein -
  ACN6MT_RS26375 (ACN6MT_26375) - 5375530..5376102 (+) 573 WP_419888699.1 CYTH domain-containing protein -
  ACN6MT_RS26380 (ACN6MT_26380) - 5376174..5376581 (+) 408 WP_419888700.1 globin -
  ACN6MT_RS26385 (ACN6MT_26385) - 5376578..5377447 (+) 870 WP_419888701.1 ClpXP adapter SpxH family protein -
  ACN6MT_RS26390 (ACN6MT_26390) - 5377720..5377893 (+) 174 WP_419888702.1 hypothetical protein -
  ACN6MT_RS26395 (ACN6MT_26395) pepF 5377926..5379743 (-) 1818 WP_419888703.1 oligoendopeptidase F Regulator
  ACN6MT_RS26400 (ACN6MT_26400) - 5379865..5381070 (-) 1206 WP_419888704.1 competence protein CoiA -
  ACN6MT_RS26405 (ACN6MT_26405) cls 5381170..5382681 (-) 1512 WP_034674007.1 cardiolipin synthase -
  ACN6MT_RS26410 (ACN6MT_26410) mecA 5382752..5383426 (-) 675 WP_419888705.1 adaptor protein MecA -
  ACN6MT_RS26415 (ACN6MT_26415) spxA 5383737..5384132 (-) 396 WP_045519743.1 transcriptional regulator SpxA -
  ACN6MT_RS26420 (ACN6MT_26420) - 5384549..5384734 (+) 186 WP_419888706.1 hypothetical protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69638.10 Da        Isoelectric Point: 4.9045

>NTDB_id=1106728 ACN6MT_RS26395 WP_419888703.1 5377926..5379743(-) (pepF) [Neobacillus niacini strain BE6]
MANEATIKALPSRSEIPVEDTWRLEDIFANDKEWENEFQDVKSQISGIKEFEGKLGESADALYNALQFQDKLLERIGKLY
TYAHMRYDQDTTNSFYQGLDDRMKNLYSQAGSQLAFIVPEILSLEESKVNGFIKEKPELKLYEHAIEEINLQRPHVLSAE
MEALLAEAGEVMDASSNTFGMLNNADLKFPSVKDENGEEVEITHGRYIRFLESADQRVRRDAFKAVYDTYGNFRNTFAST
ISGNVKKDNFNARIRKYDSARHAALSANNIPESVYDNLVNTVNDHLHLLHRYVKLRKKVLGVDELHMYDLYTPLVKDVKM
EIPYKKAEELVIKGLAPLGEEYSKILKEGFENRWVDVHENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKNQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEYEHLIHQKAQ
NNEALTADSLTSEYYALNKKYFGEEDIVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIDF
LSSGSSDYPIEVLKKAGVDMTSADPIRDACKVFEEKLNELEQLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1106728 ACN6MT_RS26395 WP_419888703.1 5377926..5379743(-) (pepF) [Neobacillus niacini strain BE6]
ATGGCAAACGAAGCTACGATAAAGGCGTTGCCTTCAAGAAGTGAAATTCCGGTTGAAGATACATGGAGATTAGAGGATAT
CTTTGCTAACGATAAAGAGTGGGAAAATGAATTTCAAGATGTAAAGAGTCAGATTTCTGGGATTAAAGAGTTTGAAGGGA
AACTTGGGGAGAGTGCAGATGCTCTTTATAATGCTCTCCAGTTTCAGGATAAGCTCCTTGAAAGAATAGGAAAGTTATAT
ACATACGCTCATATGCGTTATGACCAGGATACAACAAATTCCTTTTATCAGGGATTAGATGATAGAATGAAAAACCTCTA
TTCACAAGCTGGCAGTCAATTAGCCTTTATTGTTCCTGAAATACTTTCATTAGAGGAAAGCAAGGTTAATGGATTTATAA
AAGAAAAACCTGAACTTAAGCTTTATGAGCATGCGATTGAGGAGATTAACCTTCAGAGACCACACGTTTTGTCAGCAGAA
ATGGAAGCTTTGTTAGCAGAAGCTGGTGAAGTAATGGATGCTTCCAGTAATACCTTCGGAATGTTAAATAATGCAGATTT
AAAGTTCCCTTCCGTAAAAGATGAAAATGGTGAAGAGGTTGAGATTACCCATGGTCGTTATATCCGTTTTCTAGAAAGTG
CTGACCAAAGAGTTCGACGTGACGCCTTTAAAGCTGTTTACGACACTTATGGGAATTTCCGCAATACCTTCGCTAGCACA
ATCAGCGGGAATGTGAAAAAGGATAATTTCAATGCAAGAATTAGAAAATATGACTCTGCTAGGCATGCAGCACTATCTGC
TAATAATATTCCTGAAAGCGTGTATGATAATTTAGTAAACACAGTAAACGATCATTTACACTTATTGCACCGCTACGTTA
AGCTCAGGAAAAAGGTTTTAGGGGTAGACGAACTGCATATGTACGATCTCTACACTCCCCTTGTAAAAGATGTAAAAATG
GAGATTCCTTATAAAAAAGCAGAAGAGCTTGTAATCAAAGGGCTTGCTCCATTGGGCGAGGAGTATTCAAAGATCCTAAA
AGAGGGGTTTGAAAACCGCTGGGTAGATGTACACGAAAATAAAGGAAAGCGAAGCGGCGCTTATTCTTCAGGAGCATATG
GTACAAATCCATATATTCTTATGAATTGGCAAGATAATGTGAATAACTTATTTACGTTAGCTCATGAATTTGGCCATTCT
GTCCATAGCTACTATACAAGGAAAAATCAGCCATATCCTTATGGAAATTATTCAATTTTTGTTGCGGAAGTAGCTTCAAC
TTGTAACGAAGCGCTATTGAATGACTATTTATTAAAAACAATTGATGACGAGCAAAAAAGAATCTATTTATTAAATCATT
ATTTAGAAGGCTTCAGAGGCACTGTATTCCGTCAAACGATGTTTGCAGAATATGAGCATTTAATTCATCAAAAGGCCCAA
AATAATGAGGCTTTAACAGCGGATTCCTTAACCAGTGAATATTATGCCTTAAATAAGAAATATTTTGGTGAAGAGGATAT
CGTAATTGATGAAGAAATCGGCTTAGAGTGGGCAAGAATACCACATTTCTATTACAATTATTATGTATATCAATATGCAA
CCGGCTTCAGTGCAGCAACCGCATTAAGCAAGCAAATCCTAGAGGAAGGCGAGCCAGCAGTAAAGCGTTATATTGATTTC
TTAAGCTCTGGAAGCTCCGATTATCCAATTGAAGTACTAAAGAAAGCTGGAGTAGATATGACAAGCGCCGACCCAATCAG
GGATGCATGTAAAGTATTTGAAGAAAAGTTAAATGAACTAGAGCAGTTATTATCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.334

98.843

0.498

Multiple sequence alignment