Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACN6MY_RS17420 Genome accession   NZ_CP183879
Coordinates   3509722..3511437 (-) Length   571 a.a.
NCBI ID   WP_419881318.1    Uniprot ID   -
Organism   Peribacillus sp. B-H-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3504722..3516437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MY_RS17405 (ACN6MY_17405) - 3504967..3506544 (-) 1578 WP_419881315.1 DUF342 domain-containing protein -
  ACN6MY_RS17410 (ACN6MY_17410) spo0A 3506876..3507586 (-) 711 WP_419881316.1 sporulation transcription factor Spo0A -
  ACN6MY_RS17415 (ACN6MY_17415) spoIVB 3508152..3509447 (-) 1296 WP_419881317.1 SpoIVB peptidase -
  ACN6MY_RS17420 (ACN6MY_17420) recN 3509722..3511437 (-) 1716 WP_419881318.1 DNA repair protein RecN Machinery gene
  ACN6MY_RS17425 (ACN6MY_17425) ahrC 3511462..3511911 (-) 450 WP_419881319.1 transcriptional regulator AhrC/ArgR -
  ACN6MY_RS17430 (ACN6MY_17430) - 3512170..3513006 (-) 837 WP_419881320.1 TlyA family RNA methyltransferase -
  ACN6MY_RS17435 (ACN6MY_17435) dxs 3513011..3514900 (-) 1890 WP_419881321.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACN6MY_RS17440 (ACN6MY_17440) - 3515450..3516340 (-) 891 WP_419884202.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64207.12 Da        Isoelectric Point: 5.0927

>NTDB_id=1106641 ACN6MY_RS17420 WP_419881318.1 3509722..3511437(-) (recN) [Peribacillus sp. B-H-3]
MLTELSIRNFAIIEALSISFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGETKAEIEGLFELDEEKHPVYAK
AAEFGIDVSDGMIVLRRDMSLSGKSVCRVNGKLVTIAVLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKISSAL
AEYNDLYRKYDAAVKQLKNLSQNEQQMVHRLDLIQFQFEEIQNAALRLQEDEELAEERKKINNFEKIHEALQTSYMALSG
EQRGLDWLSVAMNGLEEAASLDDSVKETSETVSNSFFILEDAVSAIRDSLDSLEYDTERLDFIESRLNEINQLKRKYGKS
IDDILEYAAKIEEEIETLQNRETHIAKLEKQISSIKADLWLEGKNLSELRQKFSRQLTKKIQQELKELYMEKTVFEAHFH
KTAHSVNDPAEQDFGVKGMDVMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QAIAEKIYKVAVDSQVLCISHLPQVAAMADTHLFIAKNIKAGRTNTSVQPLCKEDKVKEIGRMISGVEITDLTKQHAQEL
LHQAEKLKTAQ

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=1106641 ACN6MY_RS17420 WP_419881318.1 3509722..3511437(-) (recN) [Peribacillus sp. B-H-3]
TTGTTAACTGAATTATCCATAAGGAATTTTGCAATTATAGAGGCTCTGTCGATTTCATTTGAAAAGGGCCTGACCGTTTT
GACCGGAGAAACAGGAGCCGGAAAATCAATTATTATTGATGCAGTCCATCTTCTTGTTGGAGGCAGGGGATCTGCAGAGT
TTATTCGTCACGGAGAAACCAAGGCGGAAATAGAAGGTTTGTTTGAACTGGATGAAGAAAAGCATCCTGTATATGCGAAG
GCTGCGGAATTCGGCATTGATGTCAGCGATGGAATGATCGTTTTGAGGCGTGATATGTCATTAAGCGGTAAAAGCGTCTG
CCGCGTAAATGGGAAATTGGTGACCATTGCCGTCTTAAGGGAAATAGGCAGGACACTCATCGATATTCACGGCCAGCATG
AGCATCAGGAATTAATGGATGAGCGCCTGCACTTGCCATTGCTTGATCAGTTTGGAGGCGAAAAAATTTCATCGGCCCTG
GCAGAATATAATGATCTTTACCGTAAATATGATGCAGCGGTCAAGCAATTGAAAAACCTGAGCCAAAACGAACAGCAGAT
GGTGCACCGCCTTGATTTAATCCAGTTTCAATTTGAAGAAATTCAAAATGCGGCACTCAGGCTTCAGGAAGATGAAGAGC
TGGCTGAGGAACGGAAAAAAATCAATAACTTTGAAAAAATCCATGAGGCGCTTCAAACCAGCTATATGGCTTTGAGCGGT
GAGCAAAGAGGGCTTGATTGGCTGTCAGTTGCTATGAATGGCCTTGAAGAGGCAGCAAGTCTTGATGACAGTGTCAAGGA
AACATCCGAAACTGTTTCAAACAGCTTTTTTATTTTGGAAGATGCCGTATCGGCAATCAGGGATAGCCTTGATTCACTGG
AATATGATACAGAACGGCTGGATTTCATCGAAAGCCGGTTAAATGAAATTAACCAGCTGAAGAGGAAATACGGCAAATCA
ATAGATGATATATTGGAGTACGCAGCGAAAATCGAAGAGGAAATTGAAACACTCCAGAACCGGGAAACACATATTGCCAA
ATTGGAAAAGCAGATATCGTCCATTAAAGCGGATTTATGGCTGGAAGGAAAAAACCTCTCTGAGCTGAGACAAAAATTTT
CCAGGCAGCTGACAAAGAAAATTCAGCAGGAGCTAAAAGAGCTTTATATGGAAAAAACGGTCTTTGAAGCGCACTTTCAT
AAAACTGCACATTCTGTGAATGATCCTGCTGAACAGGATTTTGGAGTCAAAGGCATGGATGTGATGGAATTTTATATTTC
AACAAATCCCGGAGAACCTTTAAAGCCGCTTTCTAAAATTGCATCCGGCGGTGAACTGTCCAGGATCATGCTTGCCTTAA
AGAGCATCTTTTCCAAACACCAGGGAATTACCTCTATCATCTTTGATGAAGTGGATACAGGTGTCAGCGGCCGAGTGGCA
CAGGCCATTGCTGAAAAAATCTATAAAGTGGCCGTGGACTCCCAGGTACTCTGCATTTCCCATCTTCCGCAAGTAGCAGC
AATGGCAGATACGCACTTATTCATCGCGAAAAATATTAAAGCAGGTCGCACTAATACCTCTGTCCAGCCATTGTGCAAGG
AAGACAAAGTGAAGGAAATTGGAAGAATGATTTCAGGAGTGGAAATTACAGATCTTACAAAACAGCATGCCCAGGAACTG
CTGCACCAGGCAGAAAAACTTAAAACGGCACAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.153

100

0.627

Multiple sequence alignment