Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACN5ZK_RS11415 Genome accession   NZ_CP183824
Coordinates   2143134..2143493 (-) Length   119 a.a.
NCBI ID   WP_096076364.1    Uniprot ID   A0AAE7Q2Z4
Organism   Macrococcoides bohemicum strain HLJ23     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2138134..2148493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN5ZK_RS11385 (ACN5ZK_11385) gcvPA 2138825..2140168 (-) 1344 WP_096076368.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACN5ZK_RS11390 (ACN5ZK_11390) gcvT 2140181..2141266 (-) 1086 WP_111745086.1 glycine cleavage system aminomethyltransferase GcvT -
  ACN5ZK_RS11395 (ACN5ZK_11395) - 2141403..2141909 (-) 507 WP_096076367.1 shikimate kinase -
  ACN5ZK_RS11400 (ACN5ZK_11400) - 2142090..2142536 (-) 447 WP_157742171.1 competence type IV pilus minor pilin ComGF -
  ACN5ZK_RS11405 (ACN5ZK_11405) - 2142484..2142729 (-) 246 WP_146606893.1 hypothetical protein -
  ACN5ZK_RS11410 (ACN5ZK_11410) - 2142716..2143186 (-) 471 WP_198337216.1 hypothetical protein -
  ACN5ZK_RS11415 (ACN5ZK_11415) comGC 2143134..2143493 (-) 360 WP_096076364.1 competence type IV pilus major pilin ComGC Machinery gene
  ACN5ZK_RS11420 (ACN5ZK_11420) comGB 2143505..2144542 (-) 1038 WP_165958576.1 competence type IV pilus assembly protein ComGB -
  ACN5ZK_RS11425 (ACN5ZK_11425) comGA 2144529..2145497 (-) 969 WP_419743668.1 competence type IV pilus ATPase ComGA Machinery gene
  ACN5ZK_RS11430 (ACN5ZK_11430) - 2145707..2145955 (+) 249 WP_096076361.1 DUF2626 domain-containing protein -
  ACN5ZK_RS11435 (ACN5ZK_11435) - 2145981..2146610 (-) 630 WP_133353337.1 MBL fold metallo-hydrolase -
  ACN5ZK_RS11440 (ACN5ZK_11440) - 2146703..2146942 (+) 240 WP_096076359.1 DUF2759 domain-containing protein -
  ACN5ZK_RS11445 (ACN5ZK_11445) - 2146979..2147290 (-) 312 WP_096076358.1 MTH1187 family thiamine-binding protein -
  ACN5ZK_RS11450 (ACN5ZK_11450) - 2147290..2148261 (-) 972 WP_096076357.1 ROK family glucokinase -
  ACN5ZK_RS11455 (ACN5ZK_11455) - 2148258..2148449 (-) 192 WP_419743669.1 YqgQ family protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13379.52 Da        Isoelectric Point: 9.1184

>NTDB_id=1106325 ACN5ZK_RS11415 WP_096076364.1 2143134..2143493(-) (comGC) [Macrococcoides bohemicum strain HLJ23]
MYQFIKTHSNNFARTFKNQFRKNDGFTLIEMLLVLLVISVLIIVIIPNIAKQSDNVQNTGCTAQVKMVQGQIEAYKLQNG
KAPTSINELVPEFLKENQVKCKNGDPINIENGEAVAQKQ

Nucleotide


Download         Length: 360 bp        

>NTDB_id=1106325 ACN5ZK_RS11415 WP_096076364.1 2143134..2143493(-) (comGC) [Macrococcoides bohemicum strain HLJ23]
ATGTATCAATTTATTAAAACACATAGTAATAATTTTGCCCGAACTTTTAAAAATCAATTCAGAAAAAATGATGGATTTAC
ATTAATTGAAATGTTGCTTGTTTTGCTTGTTATTTCAGTGCTAATTATTGTGATTATTCCAAACATCGCAAAACAATCTG
ATAACGTTCAGAATACGGGTTGTACAGCACAAGTGAAGATGGTACAAGGTCAGATAGAAGCATATAAGCTTCAGAATGGA
AAGGCGCCAACTTCGATTAATGAACTTGTGCCGGAATTTTTAAAGGAAAATCAGGTGAAATGTAAAAATGGGGATCCTAT
CAATATTGAAAATGGAGAAGCGGTGGCACAAAAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(21-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

60.204

82.353

0.496
  comGC Staphylococcus aureus N315

60.204

82.353

0.496

Multiple sequence alignment