Detailed information NTG1106127

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: ACM595_RS09495
• Genome accession: NZ_CP183796
• Coordinates: 1911103..1912731 (+)
• Length: 542 a.a.
• NCBI ID: WP_369077965.1
• Uniprot ID: -
• Organism: Staphylococcus sp. LKG3-1
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	1909733..1911082	1911103..1912731	flank	21

Gene organization within MGE regions

Location: 1909733..1912731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM595_RS09490 (ACM595_09490)	ccrA	1909733..1911082 (+)	1350	WP_369080817.1	cassette chromosome recombinase CcrA	Machinery gene
ACM595_RS09495 (ACM595_09495)	ccrB	1911103..1912731 (+)	1629	WP_369077965.1	cassette chromosome recombinase CcrB	Machinery gene

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 62347.30 Da
• Isoelectric Point: 9.7924

>NTDB_id=1106127 ACM595_RS09495 WP_369077965.1 1911103..1912731(+) (ccrB) [Staphylococcus sp. LKG3-1]
MQQLKQKRVGIYVRVSTEMQSAEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPALQRMLHDADKGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNTILENIYTGQHQRALEGYYQGN
IPLGYSNIPDNKKDLMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHAPIIGKDLWDKVQARKKQVSKKPQVHGKGTNLLTGIIFCEKCGAAYAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEVVKSDKVLKQVVERVNQENHVDVAALNHDIAYKQQQFD
EINTKLKNLVQTIEDNPDLTSAIKPTIHQYETQLNDITNQINQLKHQQNQEKPSYDTKQISIILRHIFQNIESMDKSQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide

• Length: 1629 bp

>NTDB_id=1106127 ACM595_RS09495 WP_369077965.1 1911103..1912731(+) (ccrB) [Staphylococcus sp. LKG3-1]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTCCGCGTATCAACAGAAATGCAAAGTGCAGAGGGTTATAGTAT
CGACGGTCAAATCAATCAAATCAAAGAATATTGTAACTTCCATCATTTCGAAGTCAAAGATATATACGCTGATCGTGGTA
TTTCAGGAAAGTCTATGAACCGCCCTGCACTTCAACGTATGTTACATGATGCGGATAAAGGTCATATTGATTGTGTTATG
GTGTATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAACACTTCTTCTGGTAAACTCATGTTACAAATACTTGCAAGTTTTTCCG
AATTTGAAAGAAATACCATTTTAGAGAATATTTACACCGGACAACATCAAAGAGCCTTAGAAGGCTATTACCAAGGTAAT
ATTCCTTTAGGATATTCTAATATACCAGATAATAAAAAAGATTTGATGATTAATCAGCATGAAGCTAATATTGTGAAATA
TATTTTTGAATCTTACGCCAAAGGTCATGGTTATCGTAAAATTGCCAACGCACTCAATCATAAAGGTTATGTCACTAAGA
AAGGTAATCCTTTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATCCAATTCGCGAAA
TACAAAGATTGGAATGATAAACGTCGTAAAGGCTTGAATGATAAGCCAGTAATCGCTGAAGGTAAGCACGCCCCTATTAT
TGGCAAAGACTTATGGGATAAAGTCCAAGCACGTAAGAAGCAAGTAAGCAAAAAGCCACAGGTACATGGTAAAGGAACAA
ATCTGCTAACTGGAATAATTTTTTGTGAGAAATGCGGCGCGGCATATGCAGCTTCAAATACAACCAATACACTCAAAGAC
GGTACTAAAAAACGCATTCGGTATTATTCATGTAGTAACTTTCGCAATAAAGGTTCAAAAGTGTGTTCTGCCAATAGTGT
TAGAGCTGATGTCATAGAAAAATATGTTATGGATCAAATACTCGAAGTTGTCAAAAGCGATAAAGTTCTCAAGCAAGTTG
TCGAACGCGTCAATCAAGAGAATCATGTAGATGTAGCAGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTCGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCAATCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATTAATCAGCTCAAGCACCAACAAAACCAAGAAAAACCAT
CTTACGATACGAAGCAAATATCCATTATCTTACGTCATATATTTCAAAACATAGAATCCATGGATAAATCGCAACTCAAG
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTCAA
ACTCAATAATGAAATTATTAAACAACTTTTCAATAACACTCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACACTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

• Recombinase (Recombinase) (180-280)

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (295-360)

• Resolvase, N terminal domain (Resolvase) (11-155)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	83.764	100	0.838