Detailed information NTG1106126

Bioinformatically predicted

Overview

• Name: ccrA
• Type: Machinery gene
• Locus tag: ACM595_RS09490
• Genome accession: NZ_CP183796
• Coordinates: 1909733..1911082 (+)
• Length: 449 a.a.
• NCBI ID: WP_369080817.1
• Uniprot ID: -
• Organism: Staphylococcus sp. LKG3-1
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	1909733..1911082	1909733..1911082	within	0

Gene organization within MGE regions

Location: 1909733..1911082

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM595_RS09490 (ACM595_09490)	ccrA	1909733..1911082 (+)	1350	WP_369080817.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 52246.12 Da
• Isoelectric Point: 10.0611

>NTDB_id=1106126 ACM595_RS09490 WP_369080817.1 1909733..1911082(+) (ccrA) [Staphylococcus sp. LKG3-1]
MKQAMGYLRQSTTKQQSLAAQKQTIKVLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVRDGYFDMNKAFDRLKLNIFISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYH
NGTFMINNTEAPTVKAVFSYYLQGYGYKKIAQYLEADEKCINRKPYQVRAIIMNPNYCGRVINQYGQYDNMFPSIISISN
YEQAQILRSKKHVKRTPSANQLKQKIKCPCCGSTLTNMTIRKKNHTLRYYVCPQNLNESRFVCEFKGINAQELETSVLAT
CQDFFQNQHLYSKINHTIQKRLKKQKDIEAKSTVTQEQLIEKLAQGKIDAETFREQTQSFRQQSKPITSIHTHQIQKALQ
NVIQQRFTLNMLYPYIDEIHITKNKILTGIYFKNEPLNIVNQTAQSSIA

Nucleotide

• Length: 1350 bp

>NTDB_id=1106126 ACM595_RS09490 WP_369080817.1 1909733..1911082(+) (ccrA) [Staphylococcus sp. LKG3-1]
ATGAAACAAGCAATGGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCAAGGT
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTGATTCAACAGGGACAATGTGACGTATTATGTTGCTATCGTCTAAATCGACTTCATCGTAAT
TTGAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTTCATATCTTAAGTGTTCGTGATGGCTACTTCGA
CATGAATAAGGCTTTCGATCGGTTGAAGCTCAATATTTTCATCAGTTTGGCTGAACTCGAATCAGATAATATTGGTGAAC
AAGTCAAAAATGGCCTTCGAGAAAAAGCAAAACAAGGTAAACTGATTACGACTCATGCACCCTTTGGTTATCACTATCAT
AACGGTACTTTCATGATAAACAACACAGAGGCACCAACCGTAAAAGCAGTATTCAGTTATTATCTTCAAGGCTATGGTTA
TAAAAAAATTGCACAGTACTTAGAAGCTGACGAGAAATGCATTAATCGTAAACCCTACCAAGTACGCGCTATTATCATGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAACATGTTTCCATCCATTATTTCTATAAGTAAC
TATGAACAAGCGCAGATTTTACGGTCCAAAAAGCATGTCAAAAGAACACCTTCAGCCAATCAATTGAAACAAAAAATCAA
ATGTCCATGTTGTGGCTCAACACTCACAAATATGACAATTAGAAAAAAGAACCATACATTACGTTATTACGTCTGTCCTC
AAAATTTGAATGAATCTCGTTTTGTCTGTGAATTCAAGGGGATCAACGCACAAGAATTAGAAACAAGTGTCTTAGCTACA
TGTCAAGATTTCTTTCAAAATCAACATCTGTATTCAAAAATCAACCATACAATCCAAAAACGACTCAAAAAACAAAAAGA
CATAGAAGCTAAAAGTACAGTCACGCAAGAACAACTGATAGAAAAATTAGCCCAAGGTAAAATTGATGCAGAAACATTCA
GAGAACAAACGCAATCATTTCGACAACAGTCAAAACCTATAACATCAATCCATACGCATCAAATTCAAAAGGCTTTACAA
AATGTCATTCAACAACGTTTCACATTAAACATGTTGTACCCTTACATTGATGAAATTCATATTACCAAAAATAAAATACT
TACGGGTATCTATTTCAAAAATGAACCCTTAAACATCGTCAATCAAACAGCACAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

• Recombinase (Recombinase) (169-250)

• Resolvase, N terminal domain (Resolvase) (4-147)

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (262-322)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrA	Staphylococcus aureus COL	85.523	100	0.855
ccrA	Staphylococcus aureus N315	76.837	100	0.768