Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACM595_RS05535 Genome accession   NZ_CP183796
Coordinates   1108874..1109293 (-) Length   139 a.a.
NCBI ID   WP_419744471.1    Uniprot ID   -
Organism   Staphylococcus sp. LKG3-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1103874..1114293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM595_RS05510 (ACM595_05510) thiE 1104500..1105138 (-) 639 WP_002482736.1 thiamine phosphate synthase -
  ACM595_RS05515 (ACM595_05515) thiM 1105138..1105929 (-) 792 WP_002482735.1 hydroxyethylthiazole kinase -
  ACM595_RS05520 (ACM595_05520) thiD 1105922..1106743 (-) 822 WP_002482734.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACM595_RS05525 (ACM595_05525) tenA 1106736..1107425 (-) 690 WP_002482733.1 thiaminase II -
  ACM595_RS05530 (ACM595_05530) - 1107732..1108448 (-) 717 WP_115338428.1 transglycosylase family protein -
  ACM595_RS05535 (ACM595_05535) ssb 1108874..1109293 (-) 420 WP_419744471.1 single-stranded DNA-binding protein Machinery gene
  ACM595_RS05540 (ACM595_05540) - 1109484..1109924 (+) 441 WP_002482730.1 YwpF-like family protein -
  ACM595_RS05545 (ACM595_05545) fabZ 1109982..1110419 (-) 438 WP_002482729.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACM595_RS05550 (ACM595_05550) murA 1110474..1111739 (-) 1266 WP_002482728.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACM595_RS05555 (ACM595_05555) - 1111846..1112079 (-) 234 WP_011302682.1 DUF1146 family protein -
  ACM595_RS05560 (ACM595_05560) - 1112341..1112745 (-) 405 WP_002482727.1 F0F1 ATP synthase subunit epsilon -
  ACM595_RS05565 (ACM595_05565) atpD 1112765..1114177 (-) 1413 WP_002482726.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16087.49 Da        Isoelectric Point: 7.7651

>NTDB_id=1106122 ACM595_RS05535 WP_419744471.1 1108874..1109293(-) (ssb) [Staphylococcus sp. LKG3-1]
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQTPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNVFKDINVQNNDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1106122 ACM595_RS05535 WP_419744471.1 1108874..1109293(-) (ssb) [Staphylococcus sp. LKG3-1]
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAACCCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGTATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597

Multiple sequence alignment