Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrR   Type   Regulator
Locus tag   V3C22_RS08420 Genome accession   NZ_CP183775
Coordinates   1718474..1718830 (+) Length   118 a.a.
NCBI ID   WP_002268419.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   activate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1713474..1723830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS08405 (V3C22_08405) - 1715956..1716177 (+) 222 WP_002280751.1 hypothetical protein -
  V3C22_RS08410 (V3C22_08410) - 1716574..1717518 (+) 945 WP_002262667.1 magnesium transporter CorA family protein -
  V3C22_RS08415 (V3C22_08415) - 1717673..1718335 (+) 663 WP_002304961.1 DUF1129 domain-containing protein -
  V3C22_RS08420 (V3C22_08420) hdrR 1718474..1718830 (+) 357 WP_002268419.1 LytTR family transcriptional regulator HdrR Regulator
  V3C22_RS08425 (V3C22_08425) hdrM 1718827..1719513 (+) 687 WP_002265269.1 hdrR negative regulator HdrM Regulator
  V3C22_RS08430 (V3C22_08430) - 1719521..1720240 (-) 720 WP_014677769.1 TraX family protein -
  V3C22_RS08435 (V3C22_08435) rpsR 1720559..1720798 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  V3C22_RS08440 (V3C22_08440) ssbA 1720828..1721322 (-) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  V3C22_RS08445 (V3C22_08445) rpsF 1721340..1721630 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  V3C22_RS08450 (V3C22_08450) - 1721786..1722031 (-) 246 WP_002276385.1 hypothetical protein -
  V3C22_RS08455 (V3C22_08455) - 1722336..1722506 (+) 171 WP_002284761.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 14107.43 Da        Isoelectric Point: 10.3603

>NTDB_id=1105961 V3C22_RS08420 WP_002268419.1 1718474..1718830(+) (hdrR) [Streptococcus mutans strain Xc]
MEIHLNPKHQSVEVFLEKEIFFLNIRDILFIEISNRKTYVHTNDKVYKSHLLLRDFKEILPDYFQQIGKSQIANSLEISA
INKSFSSTPKISFRHSSKTTWVSRKYYKELLMKKRSLL

Nucleotide


Download         Length: 357 bp        

>NTDB_id=1105961 V3C22_RS08420 WP_002268419.1 1718474..1718830(+) (hdrR) [Streptococcus mutans strain Xc]
ATGGAGATTCACTTAAATCCTAAACATCAGTCAGTAGAGGTCTTTTTAGAAAAGGAAATTTTCTTTTTAAATATTAGAGA
TATTCTCTTTATTGAAATCAGCAATCGGAAAACTTATGTTCATACTAATGATAAAGTTTACAAAAGCCATTTGCTTCTGC
GCGATTTCAAAGAAATTTTACCTGATTATTTTCAGCAAATTGGCAAGAGTCAGATTGCCAATAGCCTTGAAATTTCTGCC
ATCAATAAGTCTTTCTCCTCTACCCCCAAAATTAGTTTTAGACATTCATCCAAAACAACTTGGGTATCTCGTAAATACTA
CAAAGAATTACTTATGAAAAAAAGGAGTTTACTATGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(19-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrR Streptococcus mutans UA159

99.153

100

0.992

Multiple sequence alignment