Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   V3C22_RS02045 Genome accession   NZ_CP183775
Coordinates   417858..418583 (+) Length   241 a.a.
NCBI ID   WP_226708840.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 412858..423583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS02020 (V3C22_02020) - 413360..414790 (+) 1431 WP_002267778.1 NCS2 family permease -
  V3C22_RS02025 (V3C22_02025) tsaE 414919..415362 (+) 444 WP_002265162.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  V3C22_RS02030 (V3C22_02030) brpA 415693..416913 (+) 1221 WP_002269512.1 biofilm formation/cell division transcriptional regulator BrpA -
  V3C22_RS02035 (V3C22_02035) - 417084..417377 (-) 294 WP_002265649.1 hypothetical protein -
  V3C22_RS02040 (V3C22_02040) - 417374..417793 (-) 420 WP_002307776.1 HIT family protein -
  V3C22_RS02045 (V3C22_02045) pptA 417858..418583 (+) 726 WP_226708840.1 ATP-binding cassette domain-containing protein Regulator
  V3C22_RS02050 (V3C22_02050) pptB 418586..419620 (+) 1035 WP_002307772.1 ABC transporter permease Regulator
  V3C22_RS02055 (V3C22_02055) ccrZ 419679..420461 (+) 783 WP_002262606.1 cell cycle regulator CcrZ -
  V3C22_RS02060 (V3C22_02060) trmB 420471..421106 (+) 636 WP_002262605.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V3C22_RS02070 (V3C22_02070) rimP 421378..421869 (+) 492 WP_002262604.1 ribosome maturation factor RimP -
  V3C22_RS02075 (V3C22_02075) nusA 421905..423098 (+) 1194 WP_002262603.1 transcription termination factor NusA -
  V3C22_RS02080 (V3C22_02080) rnpM 423116..423412 (+) 297 WP_002263922.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26684.29 Da        Isoelectric Point: 4.9831

>NTDB_id=1105927 V3C22_RS02045 WP_226708840.1 417858..418583(+) (pptA) [Streptococcus mutans strain Xc]
MLKIENLIGGYVNIPVLKNISFEVADGELVGLIGLNGAGKSTTINEIIGLLQPYEGKISIDGLTLADQEMAYRKKIGFIP
ETPSLYEDLTLKEHLEMIAMAYDIKVEAALARAQKLLELFRLEDKLDWFPIHFSKGMKQKVMIICAFIIDPSLFIVDEPF
LGLDPVAISDLTQLLAAEKAKGKSILMSTHVLDSAEKMCDRFVILHHGQIRAQGSLADLRMTFGNAQASLNDIYMTLTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1105927 V3C22_RS02045 WP_226708840.1 417858..418583(+) (pptA) [Streptococcus mutans strain Xc]
ATGTTAAAAATAGAAAATTTGATCGGTGGTTACGTCAATATTCCTGTCTTGAAAAATATCAGTTTTGAGGTTGCTGATGG
TGAGTTGGTCGGGCTCATAGGCCTCAATGGTGCAGGAAAATCAACAACTATCAATGAAATTATTGGACTTTTGCAGCCTT
ATGAAGGCAAAATCAGTATTGATGGACTGACGCTTGCAGATCAAGAAATGGCTTATCGAAAGAAAATTGGGTTTATTCCA
GAAACACCTAGCCTTTACGAAGACTTAACCTTAAAAGAGCACTTGGAGATGATAGCCATGGCTTATGATATTAAAGTGGA
AGCAGCTTTGGCGCGTGCGCAAAAACTGCTGGAACTTTTTAGATTAGAAGATAAACTGGATTGGTTTCCTATTCATTTTT
CCAAAGGAATGAAACAAAAGGTCATGATTATCTGTGCTTTTATCATTGATCCGAGTCTTTTTATTGTTGATGAGCCTTTC
TTGGGATTGGATCCTGTTGCCATTTCAGATTTGACTCAGCTTTTGGCAGCAGAAAAGGCTAAGGGAAAATCCATTTTGAT
GTCAACTCATGTTTTGGATTCTGCTGAAAAGATGTGTGATCGCTTTGTTATTTTACATCATGGACAAATCCGAGCTCAAG
GAAGTCTCGCTGATTTACGAATGACTTTTGGAAATGCACAAGCCAGCCTTAACGATATCTATATGACTTTGACTAAAGAG
GGTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

76.151

99.17

0.755
  pptA Streptococcus salivarius strain HSISS4

75.732

99.17

0.751

Multiple sequence alignment