Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   V3C22_RS01435 Genome accession   NZ_CP183775
Coordinates   301335..302237 (+) Length   300 a.a.
NCBI ID   WP_002266018.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 296335..307237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS01415 (V3C22_01415) - 296410..296571 (+) 162 WP_226707253.1 hypothetical protein -
  V3C22_RS01420 (V3C22_01420) - 297056..297265 (+) 210 WP_002263944.1 hypothetical protein -
  V3C22_RS01425 (V3C22_01425) - 297503..297781 (+) 279 WP_002310898.1 hypothetical protein -
  V3C22_RS01430 (V3C22_01430) comA/nlmT 299039..301321 (+) 2283 WP_002266017.1 peptide cleavage/export ABC transporter Regulator
  V3C22_RS01435 (V3C22_01435) comB/nlmE 301335..302237 (+) 903 WP_002266018.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  V3C22_RS01440 (V3C22_01440) - 302610..304274 (+) 1665 WP_226706739.1 PRD domain-containing protein -
  V3C22_RS01445 (V3C22_01445) ulaG 304854..305945 (+) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34144.55 Da        Isoelectric Point: 10.4515

>NTDB_id=1105924 V3C22_RS01435 WP_002266018.1 301335..302237(+) (comB/nlmE) [Streptococcus mutans strain Xc]
MDPKFLQSAEFYRRRYHNFATLLIVPLVCLIIFLVIFLCFAKKEITVISTGEVAPTKVVDVIQSYSDSSIIKNNLDNNAA
VEKGDVLIEYSENASPNRQTEQKNIIKERQKREEKEKKKHRKSKKKKKSKSKKASKDKKKKSKDKESSSDDENETKKVSI
FASEDGIIHTNPKYDGANIIPKQTEIAQIYPDIQKTRKVLITYYASSDDVVSMKKGQTARLSLEKKGNDKVVIEGKINNV
ASSATTTKKGNLFKVTAKVKVSKKNSKLIKYGMTGKTVTVIDKKTYFDYFKDKLLHKMDN

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1105924 V3C22_RS01435 WP_002266018.1 301335..302237(+) (comB/nlmE) [Streptococcus mutans strain Xc]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTTGCGACATTATTAATTGTTCCTTT
GGTCTGCTTGATTATCTTCTTGGTCATATTCCTTTGTTTTGCTAAAAAAGAAATTACAGTGATTTCTACTGGTGAAGTTG
CACCAACAAAGGTTGTAGATGTTATCCAATCTTACAGTGACAGTTCAATCATTAAAAATAATTTAGATAATAATGCAGCT
GTTGAGAAGGGAGACGTTTTAATTGAATATTCAGAAAATGCCAGTCCAAACCGTCAGACTGAACAAAAGAATATTATAAA
AGAAAGACAAAAACGAGAAGAGAAGGAAAAGAAAAAACACCGAAAGAGCAAGAAAAAGAAGAAGTCTAAGAGCAAGAAAG
CTTCCAAAGATAAGAAAAAGAAATCGAAAGACAAGGAAAGCAGCTCTGACGATGAAAATGAGACAAAAAAGGTTTCGATT
TTTGCTTCAGAAGATGGTATTATTCATACCAATCCCAAATATGATGGTGCCAATATTATTCCGAAGCAAACCGAGATTGC
TCAAATCTATCCTGATATTCAAAAAACAAGAAAAGTGTTAATCACCTATTATGCTTCTTCTGATGATGTTGTTTCTATGA
AAAAGGGGCAAACCGCTCGTCTTTCCTTGGAAAAAAAGGGAAATGACAAGGTTGTTATTGAAGGAAAAATTAACAATGTC
GCTTCATCAGCAACTACTACTAAAAAAGGAAATCTCTTTAAGGTTACTGCCAAAGTAAAGGTTTCTAAGAAAAATAGCAA
ACTCATCAAGTATGGTATGACAGGCAAGACAGTCACTGTCATTGATAAAAAGACTTATTTTGATTATTTCAAAGATAAAT
TACTGCATAAAATGGATAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(160-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

99.667

100

0.997

Multiple sequence alignment