Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   V3C22_RS01345 Genome accession   NZ_CP183775
Coordinates   282494..283540 (+) Length   348 a.a.
NCBI ID   WP_019319868.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 277494..288540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS01330 (V3C22_01330) - 278773..280422 (+) 1650 WP_002295659.1 peptide ABC transporter substrate-binding protein -
  V3C22_RS01335 (V3C22_01335) - 280528..281442 (+) 915 WP_002262739.1 ABC transporter permease -
  V3C22_RS01340 (V3C22_01340) - 281453..282484 (+) 1032 WP_002280727.1 ABC transporter permease -
  V3C22_RS01345 (V3C22_01345) oppD 282494..283540 (+) 1047 WP_019319868.1 ABC transporter ATP-binding protein Regulator
  V3C22_RS01350 (V3C22_01350) amiF 283540..284466 (+) 927 WP_002267002.1 ABC transporter ATP-binding protein Regulator
  V3C22_RS01355 (V3C22_01355) - 285109..285711 (+) 603 WP_088724071.1 nitroreductase family protein -
  V3C22_RS01360 (V3C22_01360) gshAB 285788..288109 (-) 2322 WP_419744528.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38879.48 Da        Isoelectric Point: 5.9653

>NTDB_id=1105921 V3C22_RS01345 WP_019319868.1 282494..283540(+) (oppD) [Streptococcus mutans strain Xc]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWGKWKELTGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1105921 V3C22_RS01345 WP_019319868.1 282494..283540(+) (oppD) [Streptococcus mutans strain Xc]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACGCTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTAACCACAC
GAACTTTAATGGGGTTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACGCAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTCAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCATCAGTGGTCAGGCGGTATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTATTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATCCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGGGAAAATGGAAAGAGCTTACAGGGAGAAA
AGCATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

98.271

99.713

0.98
  amiE Streptococcus thermophilus LMG 18311

54.913

99.425

0.546
  amiE Streptococcus thermophilus LMD-9

54.913

99.425

0.546
  amiE Streptococcus salivarius strain HSISS4

56.287

95.977

0.54

Multiple sequence alignment