Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   V3C22_RS01350 Genome accession   NZ_CP183775
Coordinates   283540..284466 (+) Length   308 a.a.
NCBI ID   WP_002267002.1    Uniprot ID   A0AAX1K1D7
Organism   Streptococcus mutans strain Xc     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 278540..289466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS01330 (V3C22_01330) - 278773..280422 (+) 1650 WP_002295659.1 peptide ABC transporter substrate-binding protein -
  V3C22_RS01335 (V3C22_01335) - 280528..281442 (+) 915 WP_002262739.1 ABC transporter permease -
  V3C22_RS01340 (V3C22_01340) - 281453..282484 (+) 1032 WP_002280727.1 ABC transporter permease -
  V3C22_RS01345 (V3C22_01345) oppD 282494..283540 (+) 1047 WP_019319868.1 ABC transporter ATP-binding protein Regulator
  V3C22_RS01350 (V3C22_01350) amiF 283540..284466 (+) 927 WP_002267002.1 ABC transporter ATP-binding protein Regulator
  V3C22_RS01355 (V3C22_01355) - 285109..285711 (+) 603 WP_088724071.1 nitroreductase family protein -
  V3C22_RS01360 (V3C22_01360) gshAB 285788..288109 (-) 2322 WP_419744528.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34842.97 Da        Isoelectric Point: 7.3331

>NTDB_id=1105922 V3C22_RS01350 WP_002267002.1 283540..284466(+) (amiF) [Streptococcus mutans strain Xc]
MTENRKKLVEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGTSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPGHFVLATEEEAKAYKKK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1105922 V3C22_RS01350 WP_002267002.1 283540..284466(+) (amiF) [Streptococcus mutans strain Xc]
ATGACTGAAAATCGTAAAAAACTAGTTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCAATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGTTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTCGAAGGCGAAACGATTTCAAAATTA
AAGGGAAAATCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGTGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATTGGGACATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCCAGTTTTAGAACGTCA
ACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGATGGGCAGGAACGGGAAATGAGAGAAATTACACCGGGGCATT
TTGTTTTAGCAACAGAAGAAGAGGCAAAAGCCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.066

99.026

0.555
  amiF Streptococcus thermophilus LMG 18311

55.738

99.026

0.552
  amiF Streptococcus salivarius strain HSISS4

55.738

99.026

0.552

Multiple sequence alignment