Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACM591_RS05305 Genome accession   NZ_CP183486
Coordinates   1188080..1188499 (+) Length   139 a.a.
NCBI ID   WP_029377976.1    Uniprot ID   -
Organism   Staphylococcus sp. Ze2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1183080..1193499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM591_RS05275 (ACM591_05275) atpD 1183123..1184535 (+) 1413 WP_029377979.1 F0F1 ATP synthase subunit beta -
  ACM591_RS05280 (ACM591_05280) - 1184555..1184959 (+) 405 WP_017722095.1 F0F1 ATP synthase subunit epsilon -
  ACM591_RS05285 (ACM591_05285) - 1185299..1185532 (+) 234 WP_017722096.1 DUF1146 family protein -
  ACM591_RS05290 (ACM591_05290) murA 1185639..1186904 (+) 1266 WP_029377978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACM591_RS05295 (ACM591_05295) fabZ 1186962..1187399 (+) 438 WP_029377977.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACM591_RS05300 (ACM591_05300) - 1187449..1187889 (-) 441 WP_017722099.1 YwpF-like family protein -
  ACM591_RS05305 (ACM591_05305) ssb 1188080..1188499 (+) 420 WP_029377976.1 single-stranded DNA-binding protein Machinery gene
  ACM591_RS05310 (ACM591_05310) - 1188926..1189621 (+) 696 WP_326008537.1 transglycosylase family protein -
  ACM591_RS05315 (ACM591_05315) tenA 1190063..1190743 (+) 681 WP_042362325.1 thiaminase II -
  ACM591_RS05320 (ACM591_05320) thiD 1190745..1191566 (+) 822 WP_029377973.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACM591_RS05325 (ACM591_05325) thiM 1191559..1192347 (+) 789 WP_038678895.1 hydroxyethylthiazole kinase -
  ACM591_RS05330 (ACM591_05330) thiE 1192350..1192988 (+) 639 WP_037557147.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16163.58 Da        Isoelectric Point: 6.4617

>NTDB_id=1105863 ACM591_RS05305 WP_029377976.1 1188080..1188499(+) (ssb) [Staphylococcus sp. Ze2]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRSKDEVNEFHEIFPIEQVCNSNKEKNLQDNEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1105863 ACM591_RS05305 WP_029377976.1 1188080..1188499(+) (ssb) [Staphylococcus sp. Ze2]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACCAAAGACCCTAAAATTTATGAAAAGGAAGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATACTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGTATCACTGGTCAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACGATTAGATTTATGTCTCCGAGAAGCAAAGA
TGAAGTTAATGAATTTCATGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

66.355

76.978

0.511
  ssb Staphylococcus aureus MW2

65.421

76.978

0.504

Multiple sequence alignment