Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACN429_RS06170 Genome accession   NZ_CP183397
Coordinates   1334578..1335213 (+) Length   211 a.a.
NCBI ID   WP_007162403.1    Uniprot ID   A0A3D9ECT5
Organism   Pseudomonas oryzihabitans strain CCSM P719     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1329578..1340213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN429_RS06155 (ACN429_06155) lolD 1330092..1330793 (+) 702 WP_026083696.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACN429_RS06160 (ACN429_06160) - 1330801..1332042 (+) 1242 WP_377710548.1 lipoprotein-releasing ABC transporter permease subunit -
  ACN429_RS06165 (ACN429_06165) comA 1332146..1334386 (+) 2241 WP_377710550.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACN429_RS06170 (ACN429_06170) exbB 1334578..1335213 (+) 636 WP_007162403.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACN429_RS06175 (ACN429_06175) - 1335210..1335650 (+) 441 WP_007162404.1 ExbD/TolR family protein -
  ACN429_RS06180 (ACN429_06180) lpxK 1335647..1336654 (+) 1008 WP_377710553.1 tetraacyldisaccharide 4'-kinase -
  ACN429_RS06185 (ACN429_06185) - 1336669..1336854 (+) 186 WP_007162406.1 Trm112 family protein -
  ACN429_RS06190 (ACN429_06190) kdsB 1336851..1337615 (+) 765 WP_144962225.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACN429_RS06195 (ACN429_06195) - 1337616..1338089 (+) 474 WP_377710556.1 low molecular weight protein-tyrosine-phosphatase -
  ACN429_RS06200 (ACN429_06200) murB 1338079..1339101 (+) 1023 WP_377710558.1 UDP-N-acetylmuramate dehydrogenase -
  ACN429_RS06205 (ACN429_06205) petA 1339098..1339670 (+) 573 WP_145248565.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23035.09 Da        Isoelectric Point: 6.8860

>NTDB_id=1105535 ACN429_RS06170 WP_007162403.1 1334578..1335213(+) (exbB) [Pseudomonas oryzihabitans strain CCSM P719]
MFEMVKAGGWMMLPIILSSILATAIIAERLWTLRRSRVAPPTLLAQVWRWIQDKQLNAERLRELRAGSPLGDILAAGLAN
SRHGRDIMKEAIEEAGSRVVHDLERYLNTLGSIAALAPLMGLLGTVFGMIDIFSAFMNDGMANAPILAGGISKALVTTAT
GLLVAIPAVFFHRYLLRRVDELVVGMEQEAVKLVDILHGDREVDVREGAPA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1105535 ACN429_RS06170 WP_007162403.1 1334578..1335213(+) (exbB) [Pseudomonas oryzihabitans strain CCSM P719]
GTGTTCGAAATGGTCAAAGCGGGCGGCTGGATGATGCTGCCGATCATTCTCAGTTCCATCCTGGCCACGGCCATCATCGC
CGAGCGGCTGTGGACCCTCAGGCGCAGCCGGGTCGCACCGCCGACGCTGCTCGCTCAGGTCTGGCGCTGGATCCAGGACA
AGCAGCTCAATGCCGAGCGGCTGCGCGAATTGCGCGCCGGATCGCCACTGGGCGACATCCTCGCCGCGGGCCTGGCCAAT
TCCCGCCATGGCCGCGACATCATGAAGGAAGCCATCGAGGAAGCCGGCAGCCGCGTGGTGCACGACCTCGAGCGCTACCT
CAACACCCTCGGCAGCATCGCCGCCCTGGCGCCCCTGATGGGTCTGCTGGGTACGGTGTTCGGCATGATCGACATCTTCA
GCGCCTTCATGAACGACGGCATGGCCAATGCGCCCATCCTCGCCGGTGGCATCTCCAAGGCCCTGGTCACCACCGCCACC
GGCCTGCTGGTGGCGATTCCCGCGGTGTTCTTCCATCGCTACCTGCTGCGCCGGGTCGATGAGCTGGTGGTGGGCATGGA
GCAGGAAGCGGTCAAGCTGGTGGACATCCTTCACGGCGATCGCGAGGTGGACGTCCGCGAAGGAGCCCCGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D9ECT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

75.481

98.578

0.744

Multiple sequence alignment