Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   ACNVED_RS00945 Genome accession   NZ_CP183303
Coordinates   200992..201657 (+) Length   221 a.a.
NCBI ID   WP_419419904.1    Uniprot ID   -
Organism   Legionella sp. D16C41     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 195992..206657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNVED_RS00925 (ACNVED_00925) sidP 196313..199111 (+) 2799 WP_419419900.1 Dot/Icm T4SS effector PI-3-phosphatase SidP -
  ACNVED_RS00930 (ACNVED_00930) - 199156..199533 (+) 378 WP_419419901.1 DUF3775 domain-containing protein -
  ACNVED_RS00935 (ACNVED_00935) dapB 199585..200322 (-) 738 WP_419419902.1 4-hydroxy-tetrahydrodipicolinate reductase -
  ACNVED_RS00940 (ACNVED_00940) - 200489..200686 (-) 198 WP_419419903.1 hypothetical protein -
  ACNVED_RS00945 (ACNVED_00945) rocC 200992..201657 (+) 666 WP_419419904.1 ProQ/FinO family protein Regulator
  ACNVED_RS00950 (ACNVED_00950) pyk 202013..203443 (-) 1431 WP_419419905.1 pyruvate kinase -
  ACNVED_RS00955 (ACNVED_00955) - 203424..204617 (-) 1194 WP_419419906.1 phosphoglycerate kinase -
  ACNVED_RS00960 (ACNVED_00960) gap 204629..205621 (-) 993 WP_419419907.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25156.23 Da        Isoelectric Point: 10.6105

>NTDB_id=1105165 ACNVED_RS00945 WP_419419904.1 200992..201657(+) (rocC) [Legionella sp. D16C41]
MRRHELHPHTAAINKAQKKESKKAKSEALLWLAATFPQAFDSTTRIRPLKAGIMTDILQHIAKAGEIGISRSKIREAVVL
FTRRLDYLICLKAKEMRIDLNGNPIEPVTEEEAEHAALKIKKRIEKSIRNTRKIVTVKDSNNLKQSVKPNYQINNRATLA
DNEPYDAYYVEKPPLFNTLGSGMSVKPKVIVRHKPQRQYDPSAVARLKEKLGLARKSEEEV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1105165 ACNVED_RS00945 WP_419419904.1 200992..201657(+) (rocC) [Legionella sp. D16C41]
ATGAGAAGGCATGAACTTCATCCCCATACGGCTGCAATTAATAAAGCACAAAAAAAAGAATCTAAGAAAGCTAAAAGTGA
AGCTTTATTATGGTTAGCTGCGACCTTCCCACAAGCTTTCGACAGTACAACCCGTATTCGACCTTTAAAAGCTGGTATCA
TGACCGATATTTTACAGCATATAGCTAAAGCAGGTGAAATAGGTATTTCACGCAGTAAAATTCGTGAGGCGGTTGTTTTA
TTTACACGCCGGTTAGATTATTTAATCTGTTTAAAAGCTAAAGAAATGCGTATTGATTTAAATGGCAACCCAATCGAACC
TGTTACTGAAGAAGAAGCAGAGCATGCTGCGCTTAAAATTAAGAAGCGTATTGAAAAAAGTATCCGTAACACACGTAAAA
TTGTAACTGTAAAAGATTCCAATAATTTAAAGCAATCTGTTAAGCCTAATTATCAGATAAATAATAGAGCGACTTTAGCT
GATAATGAGCCTTACGATGCTTATTATGTTGAAAAACCGCCACTTTTTAATACTTTGGGTAGTGGAATGTCAGTTAAACC
TAAAGTGATTGTAAGACATAAACCTCAGCGTCAATATGACCCAAGTGCAGTAGCTCGCTTAAAAGAAAAGTTAGGCTTAG
CGCGCAAAAGCGAAGAAGAAGTCTAG

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(25-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

54.31

100

0.57

Multiple sequence alignment