Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ACN08S_RS18895 Genome accession   NZ_CP183265
Coordinates   1535991..1536599 (+) Length   202 a.a.
NCBI ID   WP_061014582.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sr2.36     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1530991..1541599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08S_RS18870 (ACN08S_18905) panC 1531720..1532607 (+) 888 WP_419208936.1 pantoate--beta-alanine ligase -
  ACN08S_RS18875 (ACN08S_18910) - 1532680..1533450 (-) 771 WP_305425235.1 ABC transporter permease -
  ACN08S_RS18880 (ACN08S_18915) - 1533447..1534382 (-) 936 WP_318472782.1 ABC transporter ATP-binding protein -
  ACN08S_RS18885 (ACN08S_18920) can 1534500..1535189 (+) 690 WP_008987940.1 carbonate dehydratase -
  ACN08S_RS18890 (ACN08S_18925) hpt 1535199..1535768 (-) 570 WP_305816071.1 hypoxanthine phosphoribosyltransferase -
  ACN08S_RS18895 (ACN08S_18930) opaR 1535991..1536599 (+) 609 WP_061014582.1 TetR/AcrR family transcriptional regulator Regulator
  ACN08S_RS18900 (ACN08S_18935) - 1536673..1537713 (-) 1041 WP_419208937.1 ABC transporter ATP-binding protein -
  ACN08S_RS18905 (ACN08S_18940) - 1537713..1539341 (-) 1629 WP_419208938.1 ABC transporter permease -
  ACN08S_RS18910 (ACN08S_18945) - 1539508..1540521 (-) 1014 WP_008987935.1 Fe(3+) ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23303.31 Da        Isoelectric Point: 4.8556

>NTDB_id=1104924 ACN08S_RS18895 WP_061014582.1 1535991..1536599(+) (opaR) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
MDTITKKTRTRLSPEKRRQQLLDYSLEVFARRGIGRAGHADIAEMANVSVATVFNYFPTREALVEQVLVEVENEFSALLE
ECLGDKNRTLHERLTCISHNLIDTVLEQQDWIKVWFEWSTSVREEVWPQFVETNRNNLHKVRDAFSQAIDNGEITTEQTA
DDLAKLLHGICYVLYIQANLLPDQTALHQQAETYLEALALTR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1104924 ACN08S_RS18895 WP_061014582.1 1535991..1536599(+) (opaR) [Photobacterium leiognathi subsp. mandapamensis strain Sr2.36]
ATGGATACGATTACCAAAAAAACTCGTACGCGTCTTTCACCGGAGAAAAGAAGACAGCAACTTCTTGATTACTCATTAGA
AGTATTCGCAAGAAGAGGTATCGGTCGTGCAGGTCACGCTGACATTGCTGAAATGGCAAACGTTTCCGTTGCTACCGTCT
TCAATTATTTTCCAACCCGAGAAGCACTGGTTGAACAAGTATTAGTTGAAGTTGAAAACGAGTTTAGTGCATTACTTGAA
GAATGCCTTGGTGATAAAAACAGAACACTGCACGAGCGTCTAACTTGTATTAGTCATAATCTTATCGATACCGTTTTAGA
ACAACAAGATTGGATCAAAGTATGGTTCGAGTGGAGTACTTCTGTACGTGAAGAAGTATGGCCACAATTTGTTGAAACTA
ACCGCAATAATCTACACAAAGTACGTGATGCATTTTCTCAAGCCATTGATAATGGTGAAATCACAACAGAGCAAACTGCA
GATGACTTAGCCAAATTACTGCACGGCATTTGTTACGTACTTTATATCCAAGCTAACTTGCTGCCAGATCAAACAGCACT
GCATCAACAAGCAGAAACTTACCTTGAAGCATTAGCACTCACTCGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

51.5

99.01

0.51
  hapR Vibrio cholerae C6706

47

99.01

0.465
  hapR Vibrio cholerae strain A1552

47

99.01

0.465

Multiple sequence alignment