Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ACN08Q_RS10200 Genome accession   NZ_CP183255
Coordinates   440962..441570 (-) Length   202 a.a.
NCBI ID   WP_008987938.1    Uniprot ID   A0A2T3KX82
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sr1.18     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 435962..446570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08Q_RS10185 (ACN08Q_10150) - 437039..438052 (+) 1014 WP_008987935.1 Fe(3+) ABC transporter substrate-binding protein -
  ACN08Q_RS10190 (ACN08Q_10155) - 438219..439847 (+) 1629 WP_419237157.1 ABC transporter permease -
  ACN08Q_RS10195 (ACN08Q_10160) - 439847..440887 (+) 1041 WP_008987937.1 ABC transporter ATP-binding protein -
  ACN08Q_RS10200 (ACN08Q_10165) opaR 440962..441570 (-) 609 WP_008987938.1 TetR/AcrR family transcriptional regulator Regulator
  ACN08Q_RS10205 (ACN08Q_10170) hpt 441793..442326 (+) 534 WP_008987939.1 hypoxanthine phosphoribosyltransferase -
  ACN08Q_RS10210 (ACN08Q_10175) can 442374..443063 (-) 690 WP_008987940.1 carbonate dehydratase -
  ACN08Q_RS10215 (ACN08Q_10180) - 443181..444116 (+) 936 WP_008987941.1 ABC transporter ATP-binding protein -
  ACN08Q_RS10220 (ACN08Q_10185) - 444113..444883 (+) 771 WP_419237158.1 ABC transporter permease -
  ACN08Q_RS10225 (ACN08Q_10190) panC 444955..445842 (-) 888 WP_008987943.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23363.34 Da        Isoelectric Point: 4.8556

>NTDB_id=1104889 ACN08Q_RS10200 WP_008987938.1 440962..441570(-) (opaR) [Photobacterium leiognathi subsp. mandapamensis strain Sr1.18]
MDTITKKTRTRLSPEKRRQQLLDYSLEVFARRGIGRAGHADIAEMANVSVATVFNYFPTREALVEQVLVEVENEFSALLE
ECLGDKNRTLHERLTYISHNLIDTVLEQQDWIKVWFEWSTSVREEVWPQFVETNRNNLHKVRDAFSQAIDNGEITTEQTA
DDLAKLLHGICYVLYIQANLLPDQTALHQQAETYLEALALTR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1104889 ACN08Q_RS10200 WP_008987938.1 440962..441570(-) (opaR) [Photobacterium leiognathi subsp. mandapamensis strain Sr1.18]
ATGGATACGATTACCAAAAAAACTCGTACGCGTCTTTCACCGGAGAAAAGAAGACAGCAACTTCTTGATTACTCACTAGA
AGTATTCGCAAGAAGAGGTATTGGTCGTGCAGGTCACGCTGATATTGCTGAAATGGCAAACGTTTCCGTTGCTACCGTCT
TCAATTATTTTCCAACCCGAGAAGCGCTGGTTGAACAAGTATTAGTTGAGGTTGAAAACGAGTTTAGTGCATTACTTGAA
GAATGCCTTGGTGATAAAAACAGAACACTGCACGAGCGTCTAACTTATATTAGTCACAATCTTATCGATACCGTTTTAGA
ACAACAAGATTGGATCAAAGTATGGTTCGAATGGAGTACTTCTGTACGTGAAGAAGTATGGCCACAATTTGTTGAAACTA
ACCGTAATAATCTACACAAAGTACGTGATGCATTTTCTCAAGCCATTGATAATGGTGAAATCACGACAGAGCAAACTGCA
GATGACTTAGCCAAATTACTGCACGGCATTTGCTACGTACTTTATATCCAAGCTAACTTGCTGCCAGATCAAACAGCGCT
GCATCAACAAGCAGAAACTTACCTTGAAGCATTAGCACTCACTCGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3KX82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

51.5

99.01

0.51
  hapR Vibrio cholerae C6706

47

99.01

0.465
  hapR Vibrio cholerae strain A1552

47

99.01

0.465

Multiple sequence alignment