Detailed information NTG1104885

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACN08Q_RS10105
• Genome accession: NZ_CP183255
• Coordinates: 414272..415141 (-)
• Length: 289 a.a.
• NCBI ID: WP_419237150.1
• Uniprot ID: -
• Organism: Photobacterium leiognathi subsp. mandapamensis strain Sr1.18
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 409272..420141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN08Q_RS10080 (ACN08Q_10045)	secA	409392..412124 (+)	2733	WP_045063166.1	preprotein translocase subunit SecA	-
ACN08Q_RS10085 (ACN08Q_10050)	mutT	412214..412618 (-)	405	WP_305460309.1	8-oxo-dGTP diphosphatase MutT	-
ACN08Q_RS10090 (ACN08Q_10055)	yacG	412623..412844 (-)	222	WP_008987916.1	DNA gyrase inhibitor YacG	-
ACN08Q_RS10095 (ACN08Q_10060)	zapD	412852..413598 (-)	747	WP_042117295.1	cell division protein ZapD	-
ACN08Q_RS10100 (ACN08Q_10065)	coaE	413663..414268 (-)	606	WP_318423279.1	dephospho-CoA kinase	-
ACN08Q_RS10105 (ACN08Q_10070)	pilD	414272..415141 (-)	870	WP_419237150.1	prepilin peptidase	Machinery gene
ACN08Q_RS10110 (ACN08Q_10075)	pilC	415230..416453 (-)	1224	WP_305464597.1	type II secretion system F family protein	Machinery gene
ACN08Q_RS10115 (ACN08Q_10080)	pilB	416498..418183 (-)	1686	WP_419237151.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACN08Q_RS10120 (ACN08Q_10085)	pilA	418187..418576 (-)	390	WP_045068531.1	pilin	Machinery gene
ACN08Q_RS10125 (ACN08Q_10090)	nadC	418924..419811 (-)	888	WP_419238219.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32229.50 Da
• Isoelectric Point: 5.7521

>NTDB_id=1104885 ACN08Q_RS10105 WP_419237150.1 414272..415141(-) (pilD) [Photobacterium leiognathi subsp. mandapamensis strain Sr1.18]
MAVLDYYPWLYPLFAVIFGLLVGSFLNVVIYRLPIMMERQWRKECQECFPEINAEQNDSVFNLSVPRSRCPHCNHAISAL
ENIPVISWLVLGGKCKECKAPISKRYPAIELLTAAMSLTVSLMLPPSWWSLAVIFFTFALIALTFIDIDKMLLPDQITLP
LMWAGIVLSVVGISPVSLTDSVIGAMAGYLSLWSVFWVFKLLTKKDGMGYGDFKLLAALGAWLGWQLLPFVVLLSSLVGA
LCGLVLLKMQDADNQTPFSFGPYLAIAGWIAMLWGAPIIDWYLTSYLGM

Nucleotide

• Length: 870 bp

>NTDB_id=1104885 ACN08Q_RS10105 WP_419237150.1 414272..415141(-) (pilD) [Photobacterium leiognathi subsp. mandapamensis strain Sr1.18]
ATGGCAGTACTTGATTATTACCCTTGGCTTTACCCTCTTTTTGCCGTTATTTTTGGTTTGCTTGTCGGTAGCTTTTTAAA
TGTGGTGATCTATCGCCTGCCTATCATGATGGAGCGTCAATGGCGTAAAGAATGCCAAGAGTGTTTTCCTGAAATCAACG
CAGAGCAAAACGACAGCGTATTTAATTTAAGTGTGCCACGTTCACGCTGCCCGCACTGTAATCACGCCATTAGCGCGTTG
GAAAATATTCCTGTGATCAGTTGGCTAGTACTCGGCGGCAAATGCAAAGAATGCAAAGCACCGATCAGTAAACGTTACCC
TGCCATTGAGTTACTGACAGCCGCTATGAGCTTAACCGTATCATTAATGTTGCCACCATCATGGTGGTCACTGGCAGTGA
TCTTTTTCACCTTCGCATTAATCGCGCTAACCTTTATCGATATCGATAAAATGCTACTACCCGATCAAATCACCTTACCG
CTAATGTGGGCAGGTATCGTATTATCTGTAGTTGGTATTAGCCCTGTATCGCTAACCGATTCAGTGATTGGTGCGATGGC
TGGTTATTTATCGCTGTGGAGTGTGTTCTGGGTATTTAAACTGCTGACGAAAAAAGATGGCATGGGCTACGGTGACTTCA
AACTACTTGCCGCATTAGGTGCATGGCTTGGCTGGCAATTACTGCCTTTCGTTGTGTTATTATCATCTCTTGTCGGTGCG
TTATGTGGTCTTGTATTACTTAAGATGCAAGACGCTGATAACCAAACGCCATTCTCATTTGGTCCTTACCTTGCGATTGC
TGGATGGATCGCAATGCTTTGGGGCGCACCAATCATCGACTGGTATTTAACATCATACTTAGGAATGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	62.63	100	0.626
pilD	Vibrio cholerae strain A1552	61.111	99.654	0.609
pilD	Acinetobacter baumannii D1279779	53.558	92.388	0.495
pilD	Acinetobacter nosocomialis M2	53.558	92.388	0.495
pilD	Neisseria gonorrhoeae MS11	47.518	97.578	0.464