Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ACN08M_RS04820 Genome accession   NZ_CP183250
Coordinates   974535..975143 (+) Length   202 a.a.
NCBI ID   WP_061014582.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sc16.3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 969535..980143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08M_RS04795 (ACN08M_04795) panC 970264..971151 (+) 888 WP_008987943.1 pantoate--beta-alanine ligase -
  ACN08M_RS04800 (ACN08M_04800) - 971224..971994 (-) 771 WP_008987942.1 ABC transporter permease -
  ACN08M_RS04805 (ACN08M_04805) - 971991..972926 (-) 936 WP_419239391.1 ABC transporter ATP-binding protein -
  ACN08M_RS04810 (ACN08M_04810) can 973044..973733 (+) 690 WP_008987940.1 carbonate dehydratase -
  ACN08M_RS04815 (ACN08M_04815) hpt 973743..974312 (-) 570 WP_305816071.1 hypoxanthine phosphoribosyltransferase -
  ACN08M_RS04820 (ACN08M_04820) opaR 974535..975143 (+) 609 WP_061014582.1 TetR/AcrR family transcriptional regulator Regulator
  ACN08M_RS04825 (ACN08M_04825) - 975217..976257 (-) 1041 WP_419239392.1 ABC transporter ATP-binding protein -
  ACN08M_RS04830 (ACN08M_04830) - 976257..977885 (-) 1629 WP_045068542.1 ABC transporter permease -
  ACN08M_RS04835 (ACN08M_04835) - 978052..979065 (-) 1014 WP_008987935.1 Fe(3+) ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23303.31 Da        Isoelectric Point: 4.8556

>NTDB_id=1104845 ACN08M_RS04820 WP_061014582.1 974535..975143(+) (opaR) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
MDTITKKTRTRLSPEKRRQQLLDYSLEVFARRGIGRAGHADIAEMANVSVATVFNYFPTREALVEQVLVEVENEFSALLE
ECLGDKNRTLHERLTCISHNLIDTVLEQQDWIKVWFEWSTSVREEVWPQFVETNRNNLHKVRDAFSQAIDNGEITTEQTA
DDLAKLLHGICYVLYIQANLLPDQTALHQQAETYLEALALTR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1104845 ACN08M_RS04820 WP_061014582.1 974535..975143(+) (opaR) [Photobacterium leiognathi subsp. mandapamensis strain Sc16.3]
ATGGATACGATTACCAAAAAAACTCGTACGCGTCTTTCACCGGAGAAAAGAAGACAGCAACTTCTTGATTACTCACTAGA
AGTTTTCGCAAGAAGAGGTATCGGTCGTGCAGGTCACGCTGATATTGCTGAAATGGCAAACGTTTCCGTTGCTACCGTCT
TCAATTATTTTCCAACCCGAGAAGCGCTGGTTGAACAAGTATTAGTTGAAGTTGAAAACGAGTTTAGTGCATTACTTGAA
GAATGCCTTGGTGATAAAAACAGAACACTGCACGAGCGTCTAACTTGTATTAGTCATAATCTTATCGATACCGTTTTAGA
ACAACAAGATTGGATCAAAGTATGGTTCGAGTGGAGTACTTCAGTGCGTGAGGAAGTATGGCCACAATTTGTTGAAACTA
ACCGTAATAATCTACACAAAGTACGTGATGCATTTTCTCAAGCCATTGATAATGGTGAAATCACGACAGAGCAAACTGCA
GATGACTTAGCCAAATTACTGCACGGCATTTGTTACGTACTTTATATCCAAGCTAACTTGCTGCCAGATCAAACAGCGCT
GCATCAACAAGCAGAAACTTACCTTGAAGCATTAGCACTCACTCGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

51.5

99.01

0.51
  hapR Vibrio cholerae C6706

47

99.01

0.465
  hapR Vibrio cholerae strain A1552

47

99.01

0.465

Multiple sequence alignment