Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ACN08T_RS03975 Genome accession   NZ_CP183248
Coordinates   821447..822055 (-) Length   202 a.a.
NCBI ID   WP_008987938.1    Uniprot ID   A0A2T3KX82
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 816447..827055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08T_RS03960 (ACN08T_03960) - 817525..818538 (+) 1014 WP_419205235.1 Fe(3+) ABC transporter substrate-binding protein -
  ACN08T_RS03965 (ACN08T_03965) - 818705..820333 (+) 1629 WP_107234080.1 ABC transporter permease -
  ACN08T_RS03970 (ACN08T_03970) - 820333..821373 (+) 1041 WP_107184603.1 ABC transporter ATP-binding protein -
  ACN08T_RS03975 (ACN08T_03975) opaR 821447..822055 (-) 609 WP_008987938.1 TetR/AcrR family transcriptional regulator Regulator
  ACN08T_RS03980 (ACN08T_03980) hpt 822278..822811 (+) 534 WP_008987939.1 hypoxanthine phosphoribosyltransferase -
  ACN08T_RS03985 (ACN08T_03985) can 822859..823548 (-) 690 WP_008987940.1 carbonate dehydratase -
  ACN08T_RS03990 (ACN08T_03990) - 823666..824601 (+) 936 WP_305423581.1 ABC transporter ATP-binding protein -
  ACN08T_RS03995 (ACN08T_03995) - 824598..825368 (+) 771 WP_419205236.1 ABC transporter permease -
  ACN08T_RS04000 (ACN08T_04000) panC 825440..826327 (-) 888 WP_008987943.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23363.34 Da        Isoelectric Point: 4.8556

>NTDB_id=1104815 ACN08T_RS03975 WP_008987938.1 821447..822055(-) (opaR) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
MDTITKKTRTRLSPEKRRQQLLDYSLEVFARRGIGRAGHADIAEMANVSVATVFNYFPTREALVEQVLVEVENEFSALLE
ECLGDKNRTLHERLTYISHNLIDTVLEQQDWIKVWFEWSTSVREEVWPQFVETNRNNLHKVRDAFSQAIDNGEITTEQTA
DDLAKLLHGICYVLYIQANLLPDQTALHQQAETYLEALALTR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1104815 ACN08T_RS03975 WP_008987938.1 821447..822055(-) (opaR) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
ATGGATACGATTACCAAAAAAACTCGTACGCGTCTTTCACCGGAGAAAAGAAGACAGCAACTTCTTGATTACTCACTAGA
AGTTTTCGCAAGAAGAGGTATCGGTCGTGCAGGTCACGCTGATATTGCTGAAATGGCAAACGTTTCCGTTGCTACCGTCT
TCAATTATTTTCCAACCCGAGAAGCACTGGTTGAACAAGTATTAGTTGAAGTTGAAAACGAGTTTAGTGCATTACTTGAA
GAATGCCTTGGTGATAAAAACAGAACACTGCACGAGCGTCTAACTTATATTAGTCACAATCTTATCGATACCGTTTTAGA
ACAACAAGATTGGATCAAAGTATGGTTCGAATGGAGTACTTCTGTACGTGAAGAAGTATGGCCACAATTTGTTGAAACTA
ACCGTAATAATCTACACAAAGTGCGTGATGCATTTTCTCAAGCCATTGATAATGGTGAAATCACGACAGAGCAAACTGCA
GATGACTTAGCCAAATTACTGCACGGCATTTGTTACGTACTTTATATCCAAGCTAATTTACTGCCAGATCAAACAGCGCT
GCATCAACAAGCAGAAACTTACCTTGAAGCATTAGCACTCACTCGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3KX82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

51.5

99.01

0.51
  hapR Vibrio cholerae C6706

47

99.01

0.465
  hapR Vibrio cholerae strain A1552

47

99.01

0.465

Multiple sequence alignment