Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACNS8M_RS12025 Genome accession   NZ_CP183239
Coordinates   2528307..2528942 (+) Length   211 a.a.
NCBI ID   WP_168459968.1    Uniprot ID   -
Organism   Acinetobacter sp. A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2523307..2533942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNS8M_RS12015 (ACNS8M_11950) - 2525388..2526209 (-) 822 WP_168419479.1 NAD-dependent epimerase/dehydratase family protein -
  ACNS8M_RS12020 (ACNS8M_11955) recG 2526246..2528291 (+) 2046 WP_419224834.1 ATP-dependent DNA helicase RecG -
  ACNS8M_RS12025 (ACNS8M_11960) comF 2528307..2528942 (+) 636 WP_168459968.1 ComF family protein Machinery gene
  ACNS8M_RS12030 (ACNS8M_11965) - 2529000..2529422 (-) 423 WP_419224835.1 NUDIX hydrolase -
  ACNS8M_RS12035 (ACNS8M_11970) - 2529427..2530032 (-) 606 WP_168419483.1 TIGR00730 family Rossman fold protein -
  ACNS8M_RS12040 (ACNS8M_11975) - 2530185..2531198 (+) 1014 WP_168419484.1 magnesium and cobalt transport protein CorA -
  ACNS8M_RS12045 (ACNS8M_11980) - 2531380..2531667 (-) 288 WP_419224836.1 STAS domain-containing protein -
  ACNS8M_RS12050 (ACNS8M_11985) - 2531680..2532315 (-) 636 WP_178318815.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ACNS8M_RS12055 (ACNS8M_11990) - 2532331..2533002 (-) 672 WP_168419183.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACNS8M_RS12060 (ACNS8M_11995) mlaE 2533002..2533781 (-) 780 WP_168419184.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24496.63 Da        Isoelectric Point: 9.9727

>NTDB_id=1104752 ACNS8M_RS12025 WP_168459968.1 2528307..2528942(+) (comF) [Acinetobacter sp. A2]
MRLDLTVLQRGLALFKPLQRCQLCHVDAPWQHAVCQTCWQQLPWRSQPVQRQEMQIQVAFDYLYPINRMIQQFKYEQQLQ
YQLLLAGALQQLRYDKIQAIVPMPISTARLAERGYNQSLVLAKSLAKHLNVPIWQPVTRLQQHAQKGLSRLERLEDIHQQ
FQIQTVPKIRYRRVLIVDDVVTTGSSIHALKQQLLNLGCHKVNAACVASAE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1104752 ACNS8M_RS12025 WP_168459968.1 2528307..2528942(+) (comF) [Acinetobacter sp. A2]
ATGCGTCTGGATTTAACTGTATTACAACGTGGGCTTGCCTTGTTCAAGCCACTACAACGCTGTCAGTTATGTCATGTAGA
TGCGCCATGGCAACATGCGGTCTGTCAAACCTGTTGGCAACAACTGCCTTGGCGCAGTCAGCCTGTTCAACGACAAGAAA
TGCAGATTCAAGTCGCATTTGATTATCTTTATCCCATCAATCGCATGATTCAACAATTCAAATATGAACAACAGTTACAG
TACCAACTGCTGTTAGCAGGTGCATTACAGCAATTGCGCTATGACAAAATTCAGGCAATTGTGCCTATGCCTATTTCCAC
TGCACGCTTGGCCGAACGTGGCTATAACCAATCTTTAGTGCTGGCTAAGTCTTTGGCTAAACATCTAAATGTGCCCATTT
GGCAACCTGTGACTCGCTTGCAACAGCATGCACAAAAAGGCTTAAGCCGCTTAGAGCGTCTGGAAGACATTCATCAGCAA
TTTCAAATTCAGACTGTGCCTAAAATTCGTTATCGTCGGGTTTTAATTGTAGATGATGTGGTCACAACAGGCAGCTCAAT
TCACGCACTGAAACAGCAATTGCTTAATCTTGGCTGTCATAAGGTCAATGCGGCATGTGTGGCCAGTGCTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.898

93.365

0.559
  comF Acinetobacter baumannii D1279779

59.391

93.365

0.555

Multiple sequence alignment