Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACNS8M_RS00720 Genome accession   NZ_CP183239
Coordinates   162507..163664 (-) Length   385 a.a.
NCBI ID   WP_419225019.1    Uniprot ID   -
Organism   Acinetobacter sp. A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 157507..168664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNS8M_RS00695 (ACNS8M_00685) - 157739..158344 (-) 606 WP_419225014.1 hypothetical protein -
  ACNS8M_RS00700 (ACNS8M_00690) - 158507..159052 (-) 546 WP_419225015.1 glutathione peroxidase -
  ACNS8M_RS00705 (ACNS8M_00695) - 159344..160252 (+) 909 WP_419225016.1 DMT family transporter -
  ACNS8M_RS00710 (ACNS8M_00700) - 160644..161213 (-) 570 WP_419225017.1 L-threonylcarbamoyladenylate synthase -
  ACNS8M_RS00715 (ACNS8M_00705) dprA 161257..162486 (-) 1230 WP_419225018.1 DNA-processing protein DprA Machinery gene
  ACNS8M_RS00720 (ACNS8M_00710) tsaP 162507..163664 (-) 1158 WP_419225019.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACNS8M_RS00725 (ACNS8M_00715) def 163786..164316 (+) 531 WP_154321169.1 peptide deformylase -
  ACNS8M_RS00730 (ACNS8M_00720) - 164424..164858 (+) 435 WP_154321168.1 DUF2946 family protein -
  ACNS8M_RS00735 (ACNS8M_00725) - 164922..166949 (+) 2028 WP_419225020.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42219.44 Da        Isoelectric Point: 8.8557

>NTDB_id=1104723 ACNS8M_RS00720 WP_419225019.1 162507..163664(-) (tsaP) [Acinetobacter sp. A2]
MKKVLTDTSSFRVLGFKKQVLALAVCLTVGLGAMSVAEAAPARNINPPALKANAPNVYVVKKGDTLWDISKKFLNNPLRW
PEIWASNRHVKNPHWIFPGDRLLMCTYEGRPIIGKDEGDGCEGIIRRYTGKSTNLQPQIRVESLNNTIPVIPLEYIKHWL
ERSSIIASDALQGTPYILGTSDQRVLAAKGQSVYARGAGLEVGQRYAVYREGEPYILTDANGQKFNAGLELTQVAAGIVV
RGENDITTLELTDTYNAEVRRGDRVLPVYDPMLPTLFYPTHAENVTAGGQVVRVMGSIGTAAKHSVVAIDRGTLHGVQSG
HVFSVAQKGEVVTDPKTKERVQLPGERIGNIMVFKSFDHISYAYVLDSELPIKVGANLQTPLMDD

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=1104723 ACNS8M_RS00720 WP_419225019.1 162507..163664(-) (tsaP) [Acinetobacter sp. A2]
ATGAAAAAGGTTTTGACAGACACATCCTCTTTTCGTGTCTTGGGGTTTAAAAAGCAAGTTTTAGCGCTCGCTGTATGTCT
CACTGTGGGACTTGGGGCAATGAGTGTGGCTGAAGCAGCACCTGCACGAAATATTAATCCGCCTGCTTTAAAAGCCAATG
CACCGAATGTGTATGTGGTGAAAAAAGGCGATACCTTGTGGGATATTTCTAAAAAATTCCTGAATAATCCACTGCGCTGG
CCTGAAATTTGGGCAAGCAACCGCCACGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCTTGTTAATGTGTACCTA
TGAAGGTCGCCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGCATTATTCGTCGTTACACAGGCAAGAGCACCA
ATTTACAGCCACAAATTCGCGTAGAATCTTTAAATAATACAATTCCTGTGATTCCACTGGAATACATCAAGCATTGGTTA
GAGCGCAGCAGCATTATTGCCTCAGATGCACTGCAAGGCACGCCTTATATTTTAGGTACTTCTGATCAACGCGTGTTGGC
TGCTAAAGGACAAAGCGTGTATGCACGTGGTGCAGGCCTAGAAGTTGGTCAACGTTATGCTGTCTATCGTGAAGGTGAAC
CATACATCCTAACCGATGCAAATGGTCAAAAATTCAATGCAGGCTTAGAACTCACTCAGGTTGCAGCAGGTATTGTAGTA
CGTGGTGAAAATGACATTACCACACTTGAATTGACCGACACTTACAACGCTGAAGTGCGTCGTGGTGACCGTGTCTTGCC
TGTTTATGACCCAATGTTACCAACGCTGTTCTATCCGACCCATGCTGAAAATGTAACTGCAGGCGGTCAAGTGGTTCGTG
TAATGGGTTCTATTGGTACGGCTGCAAAACACAGTGTGGTTGCCATTGACCGTGGTACGCTGCATGGCGTGCAATCAGGC
CACGTATTCTCTGTCGCTCAAAAAGGCGAAGTTGTGACTGACCCGAAAACCAAAGAGCGTGTGCAACTTCCAGGCGAACG
CATTGGTAATATCATGGTCTTCAAAAGCTTTGATCACATCAGCTATGCCTATGTATTAGACAGCGAATTGCCAATTAAAG
TGGGTGCGAACTTACAAACACCCCTAATGGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

64.935

100

0.649

Multiple sequence alignment