Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HDF20_RS27880 Genome accession   NZ_CP183228
Coordinates   6763651..6765120 (-) Length   489 a.a.
NCBI ID   WP_184550701.1    Uniprot ID   A0A7X0AAI3
Organism   Mucilaginibacter sp. FT3.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6758651..6770120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HDF20_RS27860 (HDF20_27860) - 6759713..6760417 (+) 705 WP_184550698.1 hypothetical protein -
  HDF20_RS27865 (HDF20_27865) - 6760515..6761000 (+) 486 WP_184550699.1 hypothetical protein -
  HDF20_RS27870 (HDF20_27870) - 6761046..6761510 (-) 465 WP_184550700.1 DUF4920 domain-containing protein -
  HDF20_RS27875 (HDF20_27875) - 6761759..6763135 (+) 1377 WP_184550738.1 NHL repeat-containing protein -
  HDF20_RS27880 (HDF20_27880) radA 6763651..6765120 (-) 1470 WP_184550701.1 DNA repair protein RadA Machinery gene
  HDF20_RS27885 (HDF20_27885) - 6765428..6765871 (+) 444 WP_184550702.1 DUF1569 domain-containing protein -
  HDF20_RS27890 (HDF20_27890) - 6765904..6766065 (+) 162 WP_184550703.1 hypothetical protein -
  HDF20_RS27895 (HDF20_27895) - 6766233..6766724 (+) 492 WP_184550704.1 hypothetical protein -
  HDF20_RS27900 (HDF20_27900) - 6767003..6767914 (-) 912 WP_184550706.1 hypothetical protein -
  HDF20_RS27905 (HDF20_27905) - 6767999..6769141 (-) 1143 WP_184550708.1 M12 family metallopeptidase -
  HDF20_RS27910 (HDF20_27910) - 6769189..6769464 (-) 276 WP_184550710.1 DUF4377 domain-containing protein -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 53877.86 Da        Isoelectric Point: 6.1304

>NTDB_id=1104611 HDF20_RS27880 WP_184550701.1 6763651..6765120(-) (radA) [Mucilaginibacter sp. FT3.2]
MAKTKFAYFCQSCGFESAKWLGKCPSCQQWNTFVEEIIDKGTPNNAVPTWKVTSNTQQRANKPVQVADITFSEEDRMLTP
DKEFNRVLGGGIVAGSLVLIGGEPGIGKSTLMLQLALNMPNIKVLYVSGEESERQIKMRAERLVPEATNSKSQILNPNSE
IPNPKSQIGGSCYVLCETSTQNIFKQIEALEPDLVVIDSIQTLHSSHIESTPGSVSQVRECTAELLRFAKETSTPVFLIG
HITKDGMIAGPKILEHMVDTVLQFEGDRHHVYRILRTIKNRFGSASELGIYEMLGEGLREVSNPSEILLSHRDEPLSGIT
ISATLEGMRPMLIETQALVSTSAYGTPQRTATGFDTKRMSMLLAVLEKRCGFRLAAKDVFLNITGGIRVEDPAIDLGLAA
AIISSHEDMPIPFKTCFAGEIGLSGEIRAVNRVEQRIAEAQKLGFTQIFISKYNLPSGGQDRKRMDLSRYDIDVKIVSSI
EEVFAQLFG

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=1104611 HDF20_RS27880 WP_184550701.1 6763651..6765120(-) (radA) [Mucilaginibacter sp. FT3.2]
ATGGCTAAAACTAAATTCGCATATTTCTGTCAAAGCTGCGGCTTCGAATCGGCCAAGTGGCTGGGTAAATGCCCGTCGTG
CCAGCAATGGAATACCTTTGTAGAGGAAATAATAGACAAGGGCACCCCTAACAATGCTGTACCTACGTGGAAAGTAACCT
CCAACACACAGCAACGGGCTAATAAGCCGGTGCAGGTGGCTGATATCACTTTTAGCGAAGAAGACCGCATGCTAACGCCC
GATAAGGAGTTTAACCGGGTATTGGGCGGTGGTATAGTAGCCGGCTCCCTGGTACTGATAGGCGGCGAACCGGGGATAGG
CAAATCTACCCTGATGCTGCAACTGGCGCTCAATATGCCCAATATTAAAGTGCTTTACGTATCGGGCGAGGAAAGCGAAA
GGCAGATAAAGATGAGGGCAGAAAGGTTGGTGCCTGAGGCAACAAATTCTAAATCTCAAATTCTAAATCCTAATTCCGAA
ATCCCAAATCCGAAATCCCAAATCGGAGGCTCCTGCTACGTGCTTTGCGAAACATCAACCCAAAACATATTTAAGCAAAT
AGAAGCCCTGGAGCCCGATCTGGTGGTGATAGATTCGATACAAACACTGCATTCATCACACATAGAATCTACCCCGGGCA
GTGTATCGCAGGTGCGGGAGTGTACTGCCGAGTTGCTTCGTTTTGCCAAGGAAACTTCCACGCCGGTATTTTTGATAGGT
CATATCACCAAAGATGGCATGATAGCCGGTCCCAAAATACTGGAGCACATGGTTGATACCGTTTTGCAATTTGAGGGCGA
CAGGCACCATGTTTACCGTATTCTGCGTACCATTAAAAATCGTTTCGGATCGGCATCTGAGCTGGGTATTTACGAGATGC
TGGGCGAGGGCTTAAGGGAAGTGTCTAATCCATCCGAGATTTTATTGTCGCACCGGGATGAACCCCTGAGCGGTATTACC
ATATCTGCCACCTTAGAGGGTATGCGCCCCATGCTGATAGAAACCCAGGCATTGGTAAGCACATCGGCCTATGGCACCCC
GCAGCGTACTGCTACGGGCTTCGATACCAAACGAATGAGCATGCTGCTGGCGGTATTAGAAAAGCGCTGTGGCTTTCGCC
TGGCGGCCAAGGATGTGTTTTTGAACATTACCGGCGGCATCCGGGTAGAAGACCCGGCTATCGACCTGGGTTTGGCAGCT
GCCATTATATCATCGCATGAGGATATGCCCATTCCGTTTAAAACCTGCTTCGCCGGCGAGATAGGCCTATCCGGTGAGAT
CAGGGCCGTTAACCGGGTAGAGCAGCGCATTGCCGAAGCACAAAAACTGGGCTTTACCCAAATATTTATCTCCAAATACA
ACCTCCCCTCGGGCGGCCAGGACCGGAAACGTATGGATCTTTCCCGCTACGATATAGATGTTAAAATAGTAAGCAGCATT
GAAGAGGTGTTTGCCCAATTGTTTGGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-247)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X0AAI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.298

93.456

0.489
  radA Streptococcus mitis NCTC 12261

47.853

100

0.479
  radA Streptococcus pneumoniae D39

47.648

100

0.476
  radA Streptococcus pneumoniae TIGR4

47.648

100

0.476
  radA Streptococcus pneumoniae R6

47.648

100

0.476
  radA Streptococcus pneumoniae Rx1

47.648

100

0.476
  radA Streptococcus mitis SK321

47.444

100

0.474

Multiple sequence alignment