Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACNT2N_RS25275 Genome accession   NZ_CP183197
Coordinates   5743486..5744121 (-) Length   211 a.a.
NCBI ID   WP_167352836.1    Uniprot ID   -
Organism   Pseudomonas thivervalensis strain NFX106     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5738486..5749121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNT2N_RS25240 (ACNT2N_25240) - 5738866..5739336 (-) 471 WP_208665477.1 (2Fe-2S)-binding protein -
  ACNT2N_RS25245 (ACNT2N_25245) murB 5739602..5740621 (-) 1020 WP_208665478.1 UDP-N-acetylmuramate dehydrogenase -
  ACNT2N_RS25250 (ACNT2N_25250) - 5740618..5741082 (-) 465 WP_053123844.1 low molecular weight protein-tyrosine-phosphatase -
  ACNT2N_RS25255 (ACNT2N_25255) kdsB 5741082..5741846 (-) 765 WP_208665479.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACNT2N_RS25260 (ACNT2N_25260) - 5741843..5742028 (-) 186 WP_003179363.1 Trm112 family protein -
  ACNT2N_RS25265 (ACNT2N_25265) lpxK 5742051..5743061 (-) 1011 WP_208665480.1 tetraacyldisaccharide 4'-kinase -
  ACNT2N_RS25270 (ACNT2N_25270) - 5743061..5743489 (-) 429 WP_053123850.1 ExbD/TolR family protein -
  ACNT2N_RS25275 (ACNT2N_25275) exbB 5743486..5744121 (-) 636 WP_167352836.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACNT2N_RS25280 (ACNT2N_25280) comA 5744217..5746463 (-) 2247 WP_208665481.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNT2N_RS25285 (ACNT2N_25285) - 5746608..5747123 (+) 516 WP_046063671.1 DUF2062 domain-containing protein -
  ACNT2N_RS25290 (ACNT2N_25290) - 5747289..5748068 (-) 780 WP_053124195.1 ABC transporter permease -
  ACNT2N_RS25295 (ACNT2N_25295) - 5748071..5749003 (-) 933 WP_053123854.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22812.92 Da        Isoelectric Point: 8.0840

>NTDB_id=1104462 ACNT2N_RS25275 WP_167352836.1 5743486..5744121(-) (exbB) [Pseudomonas thivervalensis strain NFX106]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMSTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1104462 ACNT2N_RS25275 WP_167352836.1 5743486..5744121(-) (exbB) [Pseudomonas thivervalensis strain NFX106]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCGGAACATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGCTCGCCGCTGGGGGAGGTCCTCGCTGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAACGCTACAT
CAATACCTTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTTTTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GCGCGTTTACCGGCTCCGGCATGAGCACCAACGCCGCAGTACTGGCGGGGGGTATTTCCAAGGCCCTGATCACCACCGCC
GCCGGCCTGATGGTGGGTATTCCAGCCGTGTTTTTCCATCGGTTCCTGCAACGCCGCGTCGACGAGCTAGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTAGTGCAGGGTGACCGTGACGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.238

99.526

0.848

Multiple sequence alignment