Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACAK36_RS09995 Genome accession   NZ_AP031585
Coordinates   2041778..2042413 (+) Length   211 a.a.
NCBI ID   WP_049580985.1    Uniprot ID   A0A7X5LTL1
Organism   Acinetobacter baumannii strain JUNP543     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2036778..2047413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK36_RS09980 (JUNP543_1998) adeT2 2037838..2038824 (-) 987 WP_049580980.1 putative multidrug efflux protein AdeT2 -
  ACAK36_RS09985 (JUNP543_1999) - 2038904..2039719 (-) 816 WP_000547774.1 NAD(P)H-binding protein -
  ACAK36_RS09990 (JUNP543_2000) recG 2039740..2041785 (+) 2046 WP_369599710.1 ATP-dependent DNA helicase RecG -
  ACAK36_RS09995 (JUNP543_2001) comF 2041778..2042413 (+) 636 WP_049580985.1 ComF family protein Machinery gene
  ACAK36_RS10000 (JUNP543_2002) - 2042416..2042817 (-) 402 WP_004839704.1 NUDIX domain-containing protein -
  ACAK36_RS10005 (JUNP543_2003) - 2042832..2043413 (-) 582 WP_002133678.1 TIGR00730 family Rossman fold protein -
  ACAK36_RS10010 (JUNP543_2004) - 2043571..2044584 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  ACAK36_RS10015 (JUNP543_2005) - 2044653..2044940 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  ACAK36_RS10020 (JUNP543_2006) - 2044952..2045593 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  ACAK36_RS10025 (JUNP543_2007) - 2045620..2046300 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACAK36_RS10030 (JUNP543_2008) mlaE 2046300..2047076 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24572.69 Da        Isoelectric Point: 9.5704

>NTDB_id=110446 ACAK36_RS09995 WP_049580985.1 2041778..2042413(+) (comF) [Acinetobacter baumannii strain JUNP543]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQIL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQENRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=110446 ACAK36_RS09995 WP_049580985.1 2041778..2042413(+) (comF) [Acinetobacter baumannii strain JUNP543]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAATCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAACCGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X5LTL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

98.578

100

0.986
  comF Acinetobacter baumannii strain A118

98.578

100

0.986

Multiple sequence alignment