Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACNT2N_RS00340 Genome accession   NZ_CP183197
Coordinates   67416..68762 (+) Length   448 a.a.
NCBI ID   WP_208665756.1    Uniprot ID   A0A2Z4ZMU1
Organism   Pseudomonas thivervalensis strain NFX106     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 62416..73762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNT2N_RS00315 (ACNT2N_00315) pgeF 62631..63356 (-) 726 WP_053125350.1 peptidoglycan editing factor PgeF -
  ACNT2N_RS00320 (ACNT2N_00320) rluD 63353..64315 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACNT2N_RS00325 (ACNT2N_00325) - 64466..65482 (+) 1017 WP_053187383.1 outer membrane protein assembly factor BamD -
  ACNT2N_RS00330 (ACNT2N_00330) - 65607..65840 (+) 234 WP_053125354.1 PP0621 family protein -
  ACNT2N_RS00335 (ACNT2N_00335) pilS 65830..67419 (+) 1590 WP_208665755.1 two-component system sensor histidine kinase NtrB Regulator
  ACNT2N_RS00340 (ACNT2N_00340) pilR 67416..68762 (+) 1347 WP_208665756.1 sigma-54-dependent transcriptional regulator Regulator
  ACNT2N_RS00345 (ACNT2N_00345) - 68940..69305 (-) 366 WP_053187386.1 DUF6124 family protein -
  ACNT2N_RS00350 (ACNT2N_00350) - 70024..70164 (-) 141 WP_156334333.1 hypothetical protein -
  ACNT2N_RS00355 (ACNT2N_00355) thiO 70397..71497 (-) 1101 WP_053125359.1 glycine oxidase ThiO -
  ACNT2N_RS00360 (ACNT2N_00360) - 71555..71956 (-) 402 WP_053125360.1 type IV pilin protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49989.36 Da        Isoelectric Point: 5.5797

>NTDB_id=1104440 ACNT2N_RS00340 WP_208665756.1 67416..68762(+) (pilR) [Pseudomonas thivervalensis strain NFX106]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGDAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVASPTSTIERCLLGDSPPMRNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAASTGSPAAKLHPQALEALQNYRFPGNVRELENMLERAYTLCEQQLIEADDLRLAEGSSAIEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=1104440 ACNT2N_RS00340 WP_208665756.1 67416..68762(+) (pilR) [Pseudomonas thivervalensis strain NFX106]
TTGAACAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGATGCTTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGTTATCCACAACTGCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGACTGCGAGAACTGGTCACGAGCGCCCTGCGCCTGCCACCGGTCGCCTCTCCGACCAGTACTA
TCGAGCGCTGCCTGTTGGGTGATTCGCCGCCGATGCGCAACGTGCGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCT
CCGGTGTACATCAGTGGGGAGTCGGGTTGCGGCAAGGAGCTGGTCGCCCGGTTGATCCACGAACAAGGCCCCCGCGCCAA
CCAAGGGTTTGTGCCGGTCAATTGTGGGGCGATTCCTACGGAACTGATGGAAAGCGAGTTCTTTGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGTGGGACCTTGTTCCTCGACGAAGTGGCC
GACCTGCCCCTGGCGATGCAGGTCAAGCTGTTACGGGCCATCCAGGAAAAGGCCGTGCGCGCCGTGGGCGGCCAGCAGGA
AGAAGTGGTCGATGTGCGAATCCTCTGCGCCACCCACAAGGACCTCGACGCCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTCCCGCCCTTGCGCGAACGCCGCGAAGACATCGAGCCGCTGGCC
AACCACATGCTCCAGCGCCTGGCCGCAAGTACTGGCAGCCCTGCGGCAAAGCTTCACCCGCAAGCATTGGAAGCCCTGCA
GAACTACCGTTTCCCGGGCAATGTGCGGGAGTTGGAGAACATGCTGGAACGGGCTTACACCTTGTGCGAACAGCAACTGA
TCGAAGCGGATGACCTGCGTCTGGCCGAGGGCAGTAGTGCGATTGAGGCGGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTTGAGCGCAAGCTCATCCTCCAAGCGTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGATTGAAGTTATCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4ZMU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.054

99.107

0.783
  pilR Acinetobacter baumannii strain A118

49.02

100

0.502

Multiple sequence alignment