Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACNM63_RS17195 Genome accession   NZ_CP183191
Coordinates   3496921..3497610 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain QC02     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3491921..3502610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM63_RS17160 (ACNM63_17160) - 3492119..3492601 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACNM63_RS17165 (ACNM63_17165) flgM 3492616..3492882 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACNM63_RS17170 (ACNM63_17170) - 3492952..3493371 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  ACNM63_RS17175 (ACNM63_17175) comFC 3493445..3494134 (-) 690 WP_206647877.1 phosphoribosyltransferase family protein Machinery gene
  ACNM63_RS17180 (ACNM63_17180) - 3494140..3494424 (-) 285 WP_022553866.1 late competence development ComFB family protein -
  ACNM63_RS17185 (ACNM63_17185) comFA 3494482..3495867 (-) 1386 WP_128496920.1 DEAD/DEAH box helicase Machinery gene
  ACNM63_RS17190 (ACNM63_17190) - 3495975..3496823 (-) 849 WP_003151387.1 DegV family protein -
  ACNM63_RS17195 (ACNM63_17195) degU 3496921..3497610 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACNM63_RS17200 (ACNM63_17200) degS 3497687..3498850 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACNM63_RS17205 (ACNM63_17205) - 3499073..3499720 (+) 648 WP_007614107.1 YigZ family protein -
  ACNM63_RS17210 (ACNM63_17210) - 3499725..3500861 (+) 1137 WP_413156714.1 LCP family protein -
  ACNM63_RS17215 (ACNM63_17215) - 3500951..3502027 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1104404 ACNM63_RS17195 WP_003219701.1 3496921..3497610(-) (degU) [Bacillus velezensis strain QC02]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1104404 ACNM63_RS17195 WP_003219701.1 3496921..3497610(-) (degU) [Bacillus velezensis strain QC02]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAATGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment