Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACNM63_RS17185 Genome accession   NZ_CP183191
Coordinates   3494482..3495867 (-) Length   461 a.a.
NCBI ID   WP_128496920.1    Uniprot ID   -
Organism   Bacillus velezensis strain QC02     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3489482..3500867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM63_RS17150 (ACNM63_17150) flgL 3489657..3490574 (-) 918 WP_065180520.1 flagellar hook-associated protein FlgL -
  ACNM63_RS17155 (ACNM63_17155) flgK 3490586..3492103 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  ACNM63_RS17160 (ACNM63_17160) - 3492119..3492601 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACNM63_RS17165 (ACNM63_17165) flgM 3492616..3492882 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACNM63_RS17170 (ACNM63_17170) - 3492952..3493371 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  ACNM63_RS17175 (ACNM63_17175) comFC 3493445..3494134 (-) 690 WP_206647877.1 phosphoribosyltransferase family protein Machinery gene
  ACNM63_RS17180 (ACNM63_17180) - 3494140..3494424 (-) 285 WP_022553866.1 late competence development ComFB family protein -
  ACNM63_RS17185 (ACNM63_17185) comFA 3494482..3495867 (-) 1386 WP_128496920.1 DEAD/DEAH box helicase Machinery gene
  ACNM63_RS17190 (ACNM63_17190) - 3495975..3496823 (-) 849 WP_003151387.1 DegV family protein -
  ACNM63_RS17195 (ACNM63_17195) degU 3496921..3497610 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACNM63_RS17200 (ACNM63_17200) degS 3497687..3498850 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACNM63_RS17205 (ACNM63_17205) - 3499073..3499720 (+) 648 WP_007614107.1 YigZ family protein -
  ACNM63_RS17210 (ACNM63_17210) - 3499725..3500861 (+) 1137 WP_413156714.1 LCP family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52706.19 Da        Isoelectric Point: 10.3121

>NTDB_id=1104403 ACNM63_RS17185 WP_128496920.1 3494482..3495867(-) (comFA) [Bacillus velezensis strain QC02]
MSEGDSEFSEVRDFFYGRRLLRSEIPFSDQRIKRLTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1104403 ACNM63_RS17185 WP_128496920.1 3494482..3495867(-) (comFA) [Bacillus velezensis strain QC02]
ATGTCCGAAGGTGATTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCGTTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTAACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCGCCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTTCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment