Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACNOHD_RS03355 Genome accession   NZ_CP183060
Coordinates   746913..748505 (-) Length   530 a.a.
NCBI ID   WP_125875632.1    Uniprot ID   A0A427EC18
Organism   Stutzerimonas kunmingensis strain L4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 741913..753505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNOHD_RS03340 (ACNOHD_03340) - 742504..744099 (-) 1596 WP_234174635.1 response regulator -
  ACNOHD_RS03345 (ACNOHD_03345) - 744315..745373 (+) 1059 WP_234174636.1 DUF2333 family protein -
  ACNOHD_RS03350 (ACNOHD_03350) pilR 745451..746788 (-) 1338 WP_125875634.1 sigma-54-dependent transcriptional regulator Regulator
  ACNOHD_RS03355 (ACNOHD_03355) pilS 746913..748505 (-) 1593 WP_125875632.1 sensor histidine kinase Regulator
  ACNOHD_RS03360 (ACNOHD_03360) - 748495..748728 (-) 234 WP_014819063.1 PP0621 family protein -
  ACNOHD_RS03365 (ACNOHD_03365) - 748845..749834 (-) 990 WP_014819064.1 outer membrane protein assembly factor BamD -
  ACNOHD_RS03370 (ACNOHD_03370) rluD 750040..751014 (+) 975 WP_014819065.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACNOHD_RS03375 (ACNOHD_03375) pgeF 751011..751745 (+) 735 WP_125875630.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58921.01 Da        Isoelectric Point: 8.1492

>NTDB_id=1103894 ACNOHD_RS03355 WP_125875632.1 746913..748505(-) (pilS) [Stutzerimonas kunmingensis strain L4]
MGTENLTFFGDQGRRILRLYHLYRLTIGLALVLLISADLHNDLLEMSNPQLFQYGAWIYLILNIIVAVLVQNPERDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSIQRPEASSQYVQASALG
TLCFAAAFLVQGLARRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQDSLAGERLA
PRCPELLKALQQWRGNPTLRPPNLRATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLGPQ
QTLHLDTVGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQNRRAQVWLRLFRDEASDLPIVEVLDDGPGIAAEQLQNIFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1103894 ACNOHD_RS03355 WP_125875632.1 746913..748505(-) (pilS) [Stutzerimonas kunmingensis strain L4]
GTGGGCACTGAAAACCTCACCTTCTTTGGCGATCAGGGACGGCGGATTCTCCGCCTGTACCACCTCTATCGGCTGACTAT
CGGCCTGGCGCTGGTTCTGCTGATCAGCGCCGACCTGCACAACGACCTGCTGGAGATGAGCAACCCGCAGCTCTTTCAGT
ACGGCGCCTGGATCTACCTGATCCTCAACATCATCGTCGCCGTGCTGGTGCAGAACCCGGAGCGCGATCTGCCCGTGCTC
GGGCTGGCGCTGATGGACGTCATCCTGCTGTCCGGGCTGTTCTACTTCGGCGGTGGCACCCCGAGCGGTATCGGCAACCT
GCTGATAGTCGCCGTTGCCATCGCCAACATACTGCTGCGTGGCAGGGTCGGTTTCTTCATCGCCGCGGTTGCTGCGACGG
GCCTGATCTACCTGACCTTCTACCTCAGCATTCAACGCCCCGAAGCCAGCAGCCAGTACGTTCAGGCCAGCGCACTCGGC
ACGCTCTGCTTTGCTGCCGCCTTCCTGGTTCAGGGGCTGGCTCGCCGCCTGCAGGTCAGCGAGACGCTGGCGCGCCAGCG
TGCGGAAGAGGTGGCGAACCTGGAGGCGCTCAACGCGCTGATCCTCCAGCGCATGCGTACCGGCATCATGGTGCTGGACC
CGCAGGAGCGCGTTCTGCTCGCCAATCAGGGGGCTCTGCAATTGCTCGGCCAGGACTCGCTGGCAGGCGAACGCCTCGCA
CCACGCTGCCCAGAACTGCTCAAGGCACTGCAACAGTGGCGAGGCAATCCGACCCTGCGCCCACCGAACCTCAGGGCAAC
GCCTGGCGGCCCAACGCTGCAGCCGAGCTTCGCCGCGCTGCAGCACGGGAACAAGCTCGACACACTGGTGTTTCTCGAAG
ACATCTCGCAGATCGCACAGAAGGCACAACAGCTCAAGCTCGCCTCCCTCGGACGCCTCACAGCCAGCATTGCCCATGAA
ATCCGCAATCCACTGGGCGCCATCAGCCATGCCGCGCAGCTGCTTCAGGAATCCGAAGAGCTGGACGGACCTGACCGCCG
TCTGGCACAGATCATTCAGGATCATTCACGGCGGATGAACCTGGTGATCGAGAACGTCCTCCAGCTTTCCCGGCGGCGCC
AGGCCGAACCCCAGCTGCTGGACCTGAAGTACTGGCTTCATCGTTTCGCCAGCGAGTTCCGCCAGGGGCTCGGCCCGCAG
CAGACCCTGCACCTGGATACCGTGGGCAGCTCACTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGACCAA
CCTGGTGCAGAACGGGCTGCGCTACAGCGGCCAGCAGAATCGGCGGGCGCAGGTCTGGCTCCGCCTGTTCCGTGACGAAG
CCAGCGACCTGCCTATCGTCGAAGTGCTCGATGACGGCCCTGGTATCGCGGCCGAGCAACTTCAGAACATCTTCGAACCG
TTCTTCACCACCGAAAGCAAAGGCACCGGGCTGGGGCTATATATCTCCCGCGAGCTGTGCGAAAGCAACCAGGCACGCCT
GGACTACCGCGAGCGACCCGAGGGCGGCAGCTGCTTCCGCATCGTCTTCGCCCACCCGCGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(202-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427EC18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.226

100

0.662

Multiple sequence alignment