Detailed information NTG1103793

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: ACNM7T_RS12015
• Genome accession: NZ_CP183041
• Coordinates: 2484659..2485096 (-)
• Length: 145 a.a.
• NCBI ID: WP_043020787.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Scm
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2479659..2490096

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNM7T_RS11965 (ACNM7T_11965)	sinI	2480043..2480216 (+)	174	WP_003153105.1	anti-repressor SinI	Regulator
ACNM7T_RS11970 (ACNM7T_11970)	sinR	2480250..2480585 (+)	336	WP_003153104.1	transcriptional regulator SinR	Regulator
ACNM7T_RS11975 (ACNM7T_11975)	tasA	2480633..2481418 (-)	786	WP_007408329.1	biofilm matrix protein TasA	-
ACNM7T_RS11980 (ACNM7T_11980)	sipW	2481483..2482067 (-)	585	WP_015240205.1	signal peptidase I SipW	-
ACNM7T_RS11985 (ACNM7T_11985)	tapA	2482039..2482710 (-)	672	WP_124934997.1	amyloid fiber anchoring/assembly protein TapA	-
ACNM7T_RS11990 (ACNM7T_11990)	-	2482969..2483298 (+)	330	WP_012117979.1	DUF3889 domain-containing protein	-
ACNM7T_RS11995 (ACNM7T_11995)	-	2483338..2483517 (-)	180	WP_003153093.1	YqzE family protein	-
ACNM7T_RS12000 (ACNM7T_12000)	comGG	2483574..2483951 (-)	378	WP_012117980.1	competence type IV pilus minor pilin ComGG	Machinery gene
ACNM7T_RS12005 (ACNM7T_12005)	comGF	2483952..2484452 (-)	501	WP_257899725.1	competence type IV pilus minor pilin ComGF	-
ACNM7T_RS12010 (ACNM7T_12010)	comGE	2484361..2484675 (-)	315	WP_012117982.1	competence type IV pilus minor pilin ComGE	-
ACNM7T_RS12015 (ACNM7T_12015)	comGD	2484659..2485096 (-)	438	WP_043020787.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACNM7T_RS12020 (ACNM7T_12020)	comGC	2485086..2485394 (-)	309	WP_003153087.1	competence type IV pilus major pilin ComGC	Machinery gene
ACNM7T_RS12025 (ACNM7T_12025)	comGB	2485399..2486436 (-)	1038	WP_094031834.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACNM7T_RS12030 (ACNM7T_12030)	comGA	2486423..2487493 (-)	1071	WP_003153083.1	competence type IV pilus ATPase ComGA	Machinery gene
ACNM7T_RS12035 (ACNM7T_12035)	-	2487687..2488637 (-)	951	WP_007408319.1	magnesium transporter CorA family protein	-
ACNM7T_RS12040 (ACNM7T_12040)	-	2488783..2490084 (+)	1302	WP_021494315.1	hemolysin family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16271.77 Da
• Isoelectric Point: 10.2475

>NTDB_id=1103793 ACNM7T_RS12015 WP_043020787.1 2484659..2485096(-) (comGD) [Bacillus amyloliquefaciens strain Scm]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPAYTHLAVRQKTELLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide

• Length: 438 bp

>NTDB_id=1103793 ACNM7T_RS12015 WP_043020787.1 2484659..2485096(-) (comGD) [Bacillus amyloliquefaciens strain Scm]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACTGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGACTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTTCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	56.164	100	0.566